Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH40820 | Soybean | cytosol | 82.3 | 80.37 |
| VIT_08s0058g00780.t01 | Wine grape | cytosol | 15.59 | 59.83 |
| KRH76068 | Soybean | cytosol | 33.66 | 26.39 |
| KRH65511 | Soybean | cytosol | 33.28 | 26.18 |
| AT2G38440.1 | Thale cress | cytosol | 22.21 | 21.09 |
| CDY69042 | Canola | nucleus | 18.83 | 20.97 |
| CDX91460 | Canola | cytosol | 21.01 | 19.96 |
| Bra005107.1-P | Field mustard | cytosol | 21.08 | 19.61 |
| Solyc09g014980.2.1 | Tomato | cytosol | 24.4 | 19.01 |
| EER92402 | Sorghum | nucleus | 17.02 | 17.37 |
| Os03t0298700-01 | Rice | cytosol | 16.79 | 17.11 |
| Zm00001d028803_P002 | Maize | nucleus | 15.14 | 16.85 |
| TraesCS4D01G190300.1 | Wheat | nucleus | 16.42 | 16.72 |
| GSMUA_Achr9P04670_001 | Banana | cytosol | 15.59 | 16.57 |
| Zm00001d047701_P002 | Maize | nucleus | 16.04 | 16.54 |
| TraesCS4A01G115200.1 | Wheat | nucleus | 16.34 | 16.53 |
| HORVU4Hr1G055030.24 | Barley | nucleus | 16.34 | 16.44 |
| GSMUA_Achr6P32700_001 | Banana | cytosol | 17.85 | 16.08 |
| KRH42863 | Soybean | nucleus | 15.74 | 15.66 |
| TraesCS4B01G189000.1 | Wheat | nucleus | 10.77 | 12.19 |
| KRH58965 | Soybean | nucleus | 8.58 | 11.52 |
Protein Annotations
| Gene3D:1.20.5.340 | Gene3D:1.20.58.1570 | EntrezGene:100819788 | MapMan:20.2.2.2.4 | EMBL:ACUP02011439 | ncoils:Coil |
| EnsemblPlantsGene:GLYMA_18G209100 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005856 | GO:GO:0008150 |
| GO:GO:0009987 | GO:GO:0016043 | GO:GO:0030036 | UniProt:K7MTQ5 | EnsemblPlants:KRH00374 | ProteinID:KRH00374 |
| ProteinID:KRH00374.1 | PANTHER:PTHR12902 | PANTHER:PTHR12902:SF12 | InterPro:SCAR/WAVE_fam | UniParc:UPI00029518EF | SEG:seg |
Description
hypothetical protein
Coordinates
chr18:-:49371019..49378449
Molecular Weight (calculated)
147206.0 Da
IEP (calculated)
4.343
GRAVY (calculated)
-0.574
Length
1328 amino acids
Sequence
(BLAST)
(BLAST)
0001: MPLCRHHIRS AHALADPELR RAADIDDSEA LLEAVAMSGL VGFLRQLGDL AQFAAEMFHD LHEEVLATAA RGHNLVSRVQ QLEAEVPALE KVFLSQTHHS
0101: SFFTKGGIEW HPNLRSEQNL VTRGDLPRFI MDSYEECRGP PRLFLLDKFD VAGAGACLKR YTDPSFFIVE SASSGKVTVE VQREKKIHKV KQKKGTRLRN
0201: GETPEVVPSH AKLHQLLLQE RIENACGDPA RLVKLKKKQL NGSAVEAKTW KSYMEKILEI PSPDHKMVCE TSIPQPGKLV SDDSSESGIK ILEISSITPM
0301: NRSLGNENTW SSPNEQELEV NSYAEMDREM DGYIVEVNEQ ISGGVTEEMS SDYLKVLDEA GLVFDEQNKR EFNLDSYHSD DVISEVDDYM DALATIESEL
0401: DTDNECGPTK KLLNIQNLTD SNGKGEPQLR AQFSDSQSFG DSLTSAEEIS SFEQDRNGEH NEVQGQLSDS LSTGTSWASD DNSPFRRDIS EEHSQLQQFS
0501: DFQYIRNSTS RIEDMSSDQL PPTFEFQRTY CREFVVDDDE HAQGEVISDS RPVSSGSCLM DSEHLMLYSD LGAASPVSLS AGTGRQSDET PSGPVELHLR
0601: IEDDEEKKCL VESIVARSDA CYPIRDDAFP VVSFDNNSLN NLDVCDPYVH SNDLLQTSNE LNLAHEGESG GHSGIEVFQA ESLNECSSEI LVSGDVGLQG
0701: EDPICPSMEV DLNPDTKLLL DVQNLKSEDD IIATQLNSED LFPVAETTSK SSITQELCFD FTSGNKPDLA EVEFLPPDHQ VNFEEVPRIL PGDEISGSTC
0801: SLDLVEDDVH IKHSSSDIIS SPMSNLTKLE ETLSIFADPC EKEMIVSEAD SRESLTELAA QKVVDQPEIT SIDVQLSMSR SVPCDPSDSG IRNNMQHSSI
0901: KEKIHYSSSI NGLKTVPVCS ELDTQRLSGQ GINPTKRVMN PLKPLIPDFL PKASKNSLEE MPPMPPLPPM QWRTGKVQHA SLFTQREDIE VNLASLQPIQ
1001: PNKLDDKSQF GLPTSEKETL PYQNLFLPVM AVESNIHQYS SGFSVGMSEQ PVSIPFQFPV MVNEANGQYN FLVPEQSQIQ NPFLTLQDRS PLGYAVALEG
1101: EINPSPCPPS LLAECVVSRA DPILQQEKPT QSPSELTEGT SLEVTKDRPG ELHLVLPAEC PDSGDDPISP KEKPTQSPSQ LMEETSLEVK TLEQSSINLE
1201: REQEDPSTSP MSPPSLEIKE TNHSLLPSEG EMAFPLDTSS QTSKRDNTET PNGKPKNKRP LPQEDPVIDP VAALDKSRLR KVTERVMPPR APKEDGRESL
1301: LEMIRSKSFN LRPAAVQRPP RIQGPKRT
0101: SFFTKGGIEW HPNLRSEQNL VTRGDLPRFI MDSYEECRGP PRLFLLDKFD VAGAGACLKR YTDPSFFIVE SASSGKVTVE VQREKKIHKV KQKKGTRLRN
0201: GETPEVVPSH AKLHQLLLQE RIENACGDPA RLVKLKKKQL NGSAVEAKTW KSYMEKILEI PSPDHKMVCE TSIPQPGKLV SDDSSESGIK ILEISSITPM
0301: NRSLGNENTW SSPNEQELEV NSYAEMDREM DGYIVEVNEQ ISGGVTEEMS SDYLKVLDEA GLVFDEQNKR EFNLDSYHSD DVISEVDDYM DALATIESEL
0401: DTDNECGPTK KLLNIQNLTD SNGKGEPQLR AQFSDSQSFG DSLTSAEEIS SFEQDRNGEH NEVQGQLSDS LSTGTSWASD DNSPFRRDIS EEHSQLQQFS
0501: DFQYIRNSTS RIEDMSSDQL PPTFEFQRTY CREFVVDDDE HAQGEVISDS RPVSSGSCLM DSEHLMLYSD LGAASPVSLS AGTGRQSDET PSGPVELHLR
0601: IEDDEEKKCL VESIVARSDA CYPIRDDAFP VVSFDNNSLN NLDVCDPYVH SNDLLQTSNE LNLAHEGESG GHSGIEVFQA ESLNECSSEI LVSGDVGLQG
0701: EDPICPSMEV DLNPDTKLLL DVQNLKSEDD IIATQLNSED LFPVAETTSK SSITQELCFD FTSGNKPDLA EVEFLPPDHQ VNFEEVPRIL PGDEISGSTC
0801: SLDLVEDDVH IKHSSSDIIS SPMSNLTKLE ETLSIFADPC EKEMIVSEAD SRESLTELAA QKVVDQPEIT SIDVQLSMSR SVPCDPSDSG IRNNMQHSSI
0901: KEKIHYSSSI NGLKTVPVCS ELDTQRLSGQ GINPTKRVMN PLKPLIPDFL PKASKNSLEE MPPMPPLPPM QWRTGKVQHA SLFTQREDIE VNLASLQPIQ
1001: PNKLDDKSQF GLPTSEKETL PYQNLFLPVM AVESNIHQYS SGFSVGMSEQ PVSIPFQFPV MVNEANGQYN FLVPEQSQIQ NPFLTLQDRS PLGYAVALEG
1101: EINPSPCPPS LLAECVVSRA DPILQQEKPT QSPSELTEGT SLEVTKDRPG ELHLVLPAEC PDSGDDPISP KEKPTQSPSQ LMEETSLEVK TLEQSSINLE
1201: REQEDPSTSP MSPPSLEIKE TNHSLLPSEG EMAFPLDTSS QTSKRDNTET PNGKPKNKRP LPQEDPVIDP VAALDKSRLR KVTERVMPPR APKEDGRESL
1301: LEMIRSKSFN LRPAAVQRPP RIQGPKRT
0001: MPLTRYQSRN EYGLADPDLY QAADKDDPEA LLEGVAMAGL VGILRQLGDL AEFAAEMFHD LHEEVMATAS RSHGLMARVQ QLEAEFPSIE KALLCQTDHS
0101: PFFSNKGVEW HPNLQLEQSV VTSGDLPRCV MDSYEECRGP PRLFLLDKFD ISGAGACLKR YTDPSFVRLE TSSYEESWDD IQREKKSQKA KRRASQWRNG
0201: GTPENALSSH AKLHELFLEE HLEAHHSDPA RVVKLKTRKL DGCSLISKSG ESYMEKFVQT RVDSKISYEI ITQNPGLLTW NMDSARDVVT DIPEISMVGA
0301: MDKSHGGSRA EVSFPSEQEN VANVNMNGGF IEKDIETVPE STYNEVRGTT ITQDSQTVLN GKPGFFQQRS YSEDLTSEAD NYVDAPATME SETETDDECR
0401: PKSRSDTLKD GNHHIYSDAV EERMEDPPQF SFSHSNGNTP VSENGRSSFG KKSTSYSYSD TASISIDDQS DGEKLSGCLP STSSFKSELV DSMSHVTPEA
0501: NKVSHDLNVQ ESVSSSNVDG QTSLSSNGTC SSPRPVSQND QSCSLTVQSL ASEVVETSPE LVRLDLMKGG NDGRKVDPFD SSKSCASFDA KNSDLPSETS
0601: SISSTSEGSR CDSTIEKNCM VASNLVNSGT SPQAFVDSQT GKQLPIADTD FETNSIVACS EVLANSGSDP EERDGRCLTG KLVPCSAGVG MEVSPDTPSK
0701: VCGPSSADGI HLKDTLDDET DCVSVTNVVV DVDSKNSVAD VGSQSSVADI DSQSSVAEIS DEHSCAFGNT ADVSVSESHE DTLENGMSVP SDFNSGVEKL
0801: AGDASPTCSK CDDHISHEGF HDLSGLDNAT TDIVPNVELD VSDNDNDTSS GGVNHAVSLS STRGKGSLPW ISTNTYQSSS DAGEIFHDTV VESDGTLLED
0901: NNPESEIKMH KSPLEVSSEG LSTEPDNKDV ESIESTSPKP SLDQRNRDTE TKSPGESILD DNCIDSTQVY NLNLLESEAI DQAVREQTSY ASHEVADEEL
1001: LQSNVFRGLE FEPQSAGLEF APQSAGIELN RPKQELNLDP TFPSFGFIPE TIPPNPEDMP PLPPMQWLIG KVPHSFPTFM GESVETSSSA LSAAPPIGSS
1101: LNVQIGSPPS ELSVSLGSDE SERLPGGFVH NASEKPLQSS IQFPTMSTDL NSQYDSSELP TIPYQECIED FGSEENNLLA DHAAQNHELV YSQASSLQLP
1201: QVKHEDFKDD ADVHESQSSS DDHHCPETKS LTPTQSTKVE DKGHSVPDAS NAETAESSNT SVQKINPVSV GDAMWPVSCF SVAPTLDTYK TEVVPTVRLP
1301: RPRSPLVDAV AAHDRRKMKK VSEMVHPPIK SKQDDKDSLL AQIRNKSVNL KPAVTTRPSI QTGPRTDLRV AAILEKANTI RMAMAGSDED EDSDSWSDS
0101: PFFSNKGVEW HPNLQLEQSV VTSGDLPRCV MDSYEECRGP PRLFLLDKFD ISGAGACLKR YTDPSFVRLE TSSYEESWDD IQREKKSQKA KRRASQWRNG
0201: GTPENALSSH AKLHELFLEE HLEAHHSDPA RVVKLKTRKL DGCSLISKSG ESYMEKFVQT RVDSKISYEI ITQNPGLLTW NMDSARDVVT DIPEISMVGA
0301: MDKSHGGSRA EVSFPSEQEN VANVNMNGGF IEKDIETVPE STYNEVRGTT ITQDSQTVLN GKPGFFQQRS YSEDLTSEAD NYVDAPATME SETETDDECR
0401: PKSRSDTLKD GNHHIYSDAV EERMEDPPQF SFSHSNGNTP VSENGRSSFG KKSTSYSYSD TASISIDDQS DGEKLSGCLP STSSFKSELV DSMSHVTPEA
0501: NKVSHDLNVQ ESVSSSNVDG QTSLSSNGTC SSPRPVSQND QSCSLTVQSL ASEVVETSPE LVRLDLMKGG NDGRKVDPFD SSKSCASFDA KNSDLPSETS
0601: SISSTSEGSR CDSTIEKNCM VASNLVNSGT SPQAFVDSQT GKQLPIADTD FETNSIVACS EVLANSGSDP EERDGRCLTG KLVPCSAGVG MEVSPDTPSK
0701: VCGPSSADGI HLKDTLDDET DCVSVTNVVV DVDSKNSVAD VGSQSSVADI DSQSSVAEIS DEHSCAFGNT ADVSVSESHE DTLENGMSVP SDFNSGVEKL
0801: AGDASPTCSK CDDHISHEGF HDLSGLDNAT TDIVPNVELD VSDNDNDTSS GGVNHAVSLS STRGKGSLPW ISTNTYQSSS DAGEIFHDTV VESDGTLLED
0901: NNPESEIKMH KSPLEVSSEG LSTEPDNKDV ESIESTSPKP SLDQRNRDTE TKSPGESILD DNCIDSTQVY NLNLLESEAI DQAVREQTSY ASHEVADEEL
1001: LQSNVFRGLE FEPQSAGLEF APQSAGIELN RPKQELNLDP TFPSFGFIPE TIPPNPEDMP PLPPMQWLIG KVPHSFPTFM GESVETSSSA LSAAPPIGSS
1101: LNVQIGSPPS ELSVSLGSDE SERLPGGFVH NASEKPLQSS IQFPTMSTDL NSQYDSSELP TIPYQECIED FGSEENNLLA DHAAQNHELV YSQASSLQLP
1201: QVKHEDFKDD ADVHESQSSS DDHHCPETKS LTPTQSTKVE DKGHSVPDAS NAETAESSNT SVQKINPVSV GDAMWPVSCF SVAPTLDTYK TEVVPTVRLP
1301: RPRSPLVDAV AAHDRRKMKK VSEMVHPPIK SKQDDKDSLL AQIRNKSVNL KPAVTTRPSI QTGPRTDLRV AAILEKANTI RMAMAGSDED EDSDSWSDS
Arabidopsis Description
SCAR2Protein SCAR2 [Source:UniProtKB/Swiss-Prot;Acc:Q5XPJ9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.