Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY69042 | Canola | nucleus | 66.6 | 79.78 |
| VIT_08s0058g00780.t01 | Wine grape | cytosol | 12.75 | 52.6 |
| AT2G38440.1 | Thale cress | cytosol | 47.97 | 48.96 |
| KRH40820 | Soybean | cytosol | 21.71 | 22.79 |
| KRH76068 | Soybean | cytosol | 25.21 | 21.25 |
| KRH00374 | Soybean | cytosol | 19.61 | 21.08 |
| KRH65511 | Soybean | cytosol | 24.09 | 20.38 |
| Solyc09g014980.2.1 | Tomato | cytosol | 24.02 | 20.13 |
| Bra005450.1-P | Field mustard | nucleus | 11.83 | 19.03 |
| Os03t0298700-01 | Rice | cytosol | 16.95 | 18.57 |
| Zm00001d047701_P002 | Maize | nucleus | 16.74 | 18.56 |
| EER92402 | Sorghum | nucleus | 16.81 | 18.45 |
| Zm00001d028803_P002 | Maize | nucleus | 15.13 | 18.11 |
| Bra010847.1-P | Field mustard | nucleus | 11.97 | 17.81 |
| GSMUA_Achr9P04670_001 | Banana | cytosol | 15.48 | 17.69 |
| TraesCS4D01G190300.1 | Wheat | nucleus | 15.13 | 16.56 |
| TraesCS4A01G115200.1 | Wheat | nucleus | 15.06 | 16.37 |
| HORVU4Hr1G055030.24 | Barley | nucleus | 15.06 | 16.29 |
| GSMUA_Achr6P32700_001 | Banana | cytosol | 15.41 | 14.93 |
| TraesCS4B01G189000.1 | Wheat | nucleus | 8.26 | 10.06 |
| Bra013329.1-P | Field mustard | nucleus | 15.55 | 9.69 |
Protein Annotations
| Gene3D:1.20.5.340 | Gene3D:1.20.58.1570 | MapMan:20.2.2.2.4 | EnsemblPlantsGene:Bra005107 | EnsemblPlants:Bra005107.1 | EnsemblPlants:Bra005107.1-P |
| GO:GO:0003674 | GO:GO:0003779 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005856 | GO:GO:0005886 | GO:GO:0008150 | GO:GO:0009653 |
| GO:GO:0009987 | GO:GO:0010090 | GO:GO:0010091 | GO:GO:0016020 | GO:GO:0016043 | GO:GO:0030036 |
| GO:GO:0030154 | GO:GO:0051127 | InterPro:IPR003124 | UniProt:M4CLM0 | PFscan:PS51082 | PANTHER:PTHR12902 |
| PANTHER:PTHR12902:SF12 | InterPro:SCAR/WAVE_fam | UniParc:UPI00025476B4 | InterPro:WH2_dom | SEG:seg | : |
Description
AT2G38440 (E=0.0) ITB1, SCAR2, DIS3, WAVE4, ATSCAR2 | SCAR2 (SCAR HOMOLOG 2)
Coordinates
chrA05:-:3458343..3463745
Molecular Weight (calculated)
154232.0 Da
IEP (calculated)
4.199
GRAVY (calculated)
-0.667
Length
1428 amino acids
Sequence
(BLAST)
(BLAST)
0001: MPLTRYQSRN EYGLADPDLY QSADKDDPEA LLEGVAMAGL VGLLRQLGDL AEFAAEMFHD LHEEVMATAS RSHGLMARVQ QLESELPFVE KALLCQTDHS
0101: PFFSNKGVEW HSNLQMEQSV VTRGDLPRCV MDSYEESRGP PRLFLLDKFD ISGAGACLKR YTDPSFVRHE TSSYEASWDD IQREKKSLKA KFSDCHSFSS
0201: NLMQRRASHW RNGGTPENAL TSHAKLHELF REEHLEAIHS DPARVVKLKT RKLDGYSLIS KSGESYMGRF VQTSVNNEAG YENISLNQPE LLTWNIDSAK
0301: DVVTDIPEIS MVDAPEKSHG GTRIDVSLPN QQENAGFIEK DIETVPESTH NGFPGTTLTK DSQTNLNGKQ GFLQHRSYSE DLTSEADNYV DAPATMESET
0401: ETDDEYSRLK HRSDALNDGN HHTYSDVDEK RENPPQFSFL HSVGNTPVSE NGQGSFGKRS TSFSYSDTAS VSIDDQSDGE KFSGRLPSTS SVKSELVGPS
0501: STATPEANKV SHDSNVQESV SSSNADGQAS FISNDSCSSP RSVSQNAESC SLTVQSLAPE VVETSVELAR INPVKGGNDG SEVDPVDSRS GASFDVKNSN
0601: FPSETSSVSS TSEGSKYDTA GQKKCMGDYS SNVANSVLQK NCMVDYSSNV ANSVPGPPVF VDSQTGEQLP VADNDVETNS PVAANSGNDT ESCDGSSRTG
0701: EVLPFSAGME MEVSPDFASK VCLPGTIDES LFEDTLDDET PSVTVANAVS GVDSRSADVD NEQSCAFGTT AEVSVSESHE DTLENGMSAP TELDSMLTSA
0801: FNSGGEKSMG YASPSCSRFD EQISDIPAEF HSSHIHDEGV HDLPGLDNIS TDIVPKEDLA VSDNHADISS DDEDHAVSLS STSMKGSLPW RSTNTSKSSS
0901: EATDSCHDTA VESNGILPAK NNSALEKTVQ ESPLEASSEG LGTSLDNNDL AGSESVSPMI SLDQSNRDRE TKSPCESIPD ENGIDSLPAN NMNLTESLTT
1001: EPSVKVQTPC VSHALEDEEL KLSSVSRGLE FVPQSAGIEW NNPKQELNLD PIFPSFGLIP ETTTPNQEDM PPLPPLPPMQ WRIGKAPQSF LPNFMGELGE
1101: TSSSAPSAAP PSGSSLNVQM WSTPELSESL GREKSEQLPG ESMTSESEKP LHSSIQFPSV ATDLNSQYDS FGSQRTQSAD PSIELLAIPN HGSIEDVGSE
1201: ENNLLADHTS QNQELVYSQE SSLQLPQEPS AKNEDFEDDT DVQVSETSRG QKDCPETEAL TPPQSAKVED NGHSDPDASS AEIAEPSNSS VQKITPASVG
1301: DAMWPVNAFT VAPTLDTDKL EEVPMVKLPR PRSPLVDAVA AHDRRTLKKV SERVQPPIKS KQDDKDSLLA QIRNKSVSLK PAVATRPSIQ TGPKTNLRVA
1401: AILEKANTIR QAMAGSDEDE DSDSWSDS
0101: PFFSNKGVEW HSNLQMEQSV VTRGDLPRCV MDSYEESRGP PRLFLLDKFD ISGAGACLKR YTDPSFVRHE TSSYEASWDD IQREKKSLKA KFSDCHSFSS
0201: NLMQRRASHW RNGGTPENAL TSHAKLHELF REEHLEAIHS DPARVVKLKT RKLDGYSLIS KSGESYMGRF VQTSVNNEAG YENISLNQPE LLTWNIDSAK
0301: DVVTDIPEIS MVDAPEKSHG GTRIDVSLPN QQENAGFIEK DIETVPESTH NGFPGTTLTK DSQTNLNGKQ GFLQHRSYSE DLTSEADNYV DAPATMESET
0401: ETDDEYSRLK HRSDALNDGN HHTYSDVDEK RENPPQFSFL HSVGNTPVSE NGQGSFGKRS TSFSYSDTAS VSIDDQSDGE KFSGRLPSTS SVKSELVGPS
0501: STATPEANKV SHDSNVQESV SSSNADGQAS FISNDSCSSP RSVSQNAESC SLTVQSLAPE VVETSVELAR INPVKGGNDG SEVDPVDSRS GASFDVKNSN
0601: FPSETSSVSS TSEGSKYDTA GQKKCMGDYS SNVANSVLQK NCMVDYSSNV ANSVPGPPVF VDSQTGEQLP VADNDVETNS PVAANSGNDT ESCDGSSRTG
0701: EVLPFSAGME MEVSPDFASK VCLPGTIDES LFEDTLDDET PSVTVANAVS GVDSRSADVD NEQSCAFGTT AEVSVSESHE DTLENGMSAP TELDSMLTSA
0801: FNSGGEKSMG YASPSCSRFD EQISDIPAEF HSSHIHDEGV HDLPGLDNIS TDIVPKEDLA VSDNHADISS DDEDHAVSLS STSMKGSLPW RSTNTSKSSS
0901: EATDSCHDTA VESNGILPAK NNSALEKTVQ ESPLEASSEG LGTSLDNNDL AGSESVSPMI SLDQSNRDRE TKSPCESIPD ENGIDSLPAN NMNLTESLTT
1001: EPSVKVQTPC VSHALEDEEL KLSSVSRGLE FVPQSAGIEW NNPKQELNLD PIFPSFGLIP ETTTPNQEDM PPLPPLPPMQ WRIGKAPQSF LPNFMGELGE
1101: TSSSAPSAAP PSGSSLNVQM WSTPELSESL GREKSEQLPG ESMTSESEKP LHSSIQFPSV ATDLNSQYDS FGSQRTQSAD PSIELLAIPN HGSIEDVGSE
1201: ENNLLADHTS QNQELVYSQE SSLQLPQEPS AKNEDFEDDT DVQVSETSRG QKDCPETEAL TPPQSAKVED NGHSDPDASS AEIAEPSNSS VQKITPASVG
1301: DAMWPVNAFT VAPTLDTDKL EEVPMVKLPR PRSPLVDAVA AHDRRTLKKV SERVQPPIKS KQDDKDSLLA QIRNKSVSLK PAVATRPSIQ TGPKTNLRVA
1401: AILEKANTIR QAMAGSDEDE DSDSWSDS
0001: MPLTRYQSRN EYGLADPDLY QAADKDDPEA LLEGVAMAGL VGILRQLGDL AEFAAEMFHD LHEEVMATAS RSHGLMARVQ QLEAEFPSIE KALLCQTDHS
0101: PFFSNKGVEW HPNLQLEQSV VTSGDLPRCV MDSYEECRGP PRLFLLDKFD ISGAGACLKR YTDPSFVRLE TSSYEESWDD IQREKKSQKA KRRASQWRNG
0201: GTPENALSSH AKLHELFLEE HLEAHHSDPA RVVKLKTRKL DGCSLISKSG ESYMEKFVQT RVDSKISYEI ITQNPGLLTW NMDSARDVVT DIPEISMVGA
0301: MDKSHGGSRA EVSFPSEQEN VANVNMNGGF IEKDIETVPE STYNEVRGTT ITQDSQTVLN GKPGFFQQRS YSEDLTSEAD NYVDAPATME SETETDDECR
0401: PKSRSDTLKD GNHHIYSDAV EERMEDPPQF SFSHSNGNTP VSENGRSSFG KKSTSYSYSD TASISIDDQS DGEKLSGCLP STSSFKSELV DSMSHVTPEA
0501: NKVSHDLNVQ ESVSSSNVDG QTSLSSNGTC SSPRPVSQND QSCSLTVQSL ASEVVETSPE LVRLDLMKGG NDGRKVDPFD SSKSCASFDA KNSDLPSETS
0601: SISSTSEGSR CDSTIEKNCM VASNLVNSGT SPQAFVDSQT GKQLPIADTD FETNSIVACS EVLANSGSDP EERDGRCLTG KLVPCSAGVG MEVSPDTPSK
0701: VCGPSSADGI HLKDTLDDET DCVSVTNVVV DVDSKNSVAD VGSQSSVADI DSQSSVAEIS DEHSCAFGNT ADVSVSESHE DTLENGMSVP SDFNSGVEKL
0801: AGDASPTCSK CDDHISHEGF HDLSGLDNAT TDIVPNVELD VSDNDNDTSS GGVNHAVSLS STRGKGSLPW ISTNTYQSSS DAGEIFHDTV VESDGTLLED
0901: NNPESEIKMH KSPLEVSSEG LSTEPDNKDV ESIESTSPKP SLDQRNRDTE TKSPGESILD DNCIDSTQVY NLNLLESEAI DQAVREQTSY ASHEVADEEL
1001: LQSNVFRGLE FEPQSAGLEF APQSAGIELN RPKQELNLDP TFPSFGFIPE TIPPNPEDMP PLPPMQWLIG KVPHSFPTFM GESVETSSSA LSAAPPIGSS
1101: LNVQIGSPPS ELSVSLGSDE SERLPGGFVH NASEKPLQSS IQFPTMSTDL NSQYDSSELP TIPYQECIED FGSEENNLLA DHAAQNHELV YSQASSLQLP
1201: QVKHEDFKDD ADVHESQSSS DDHHCPETKS LTPTQSTKVE DKGHSVPDAS NAETAESSNT SVQKINPVSV GDAMWPVSCF SVAPTLDTYK TEVVPTVRLP
1301: RPRSPLVDAV AAHDRRKMKK VSEMVHPPIK SKQDDKDSLL AQIRNKSVNL KPAVTTRPSI QTGPRTDLRV AAILEKANTI RMAMAGSDED EDSDSWSDS
0101: PFFSNKGVEW HPNLQLEQSV VTSGDLPRCV MDSYEECRGP PRLFLLDKFD ISGAGACLKR YTDPSFVRLE TSSYEESWDD IQREKKSQKA KRRASQWRNG
0201: GTPENALSSH AKLHELFLEE HLEAHHSDPA RVVKLKTRKL DGCSLISKSG ESYMEKFVQT RVDSKISYEI ITQNPGLLTW NMDSARDVVT DIPEISMVGA
0301: MDKSHGGSRA EVSFPSEQEN VANVNMNGGF IEKDIETVPE STYNEVRGTT ITQDSQTVLN GKPGFFQQRS YSEDLTSEAD NYVDAPATME SETETDDECR
0401: PKSRSDTLKD GNHHIYSDAV EERMEDPPQF SFSHSNGNTP VSENGRSSFG KKSTSYSYSD TASISIDDQS DGEKLSGCLP STSSFKSELV DSMSHVTPEA
0501: NKVSHDLNVQ ESVSSSNVDG QTSLSSNGTC SSPRPVSQND QSCSLTVQSL ASEVVETSPE LVRLDLMKGG NDGRKVDPFD SSKSCASFDA KNSDLPSETS
0601: SISSTSEGSR CDSTIEKNCM VASNLVNSGT SPQAFVDSQT GKQLPIADTD FETNSIVACS EVLANSGSDP EERDGRCLTG KLVPCSAGVG MEVSPDTPSK
0701: VCGPSSADGI HLKDTLDDET DCVSVTNVVV DVDSKNSVAD VGSQSSVADI DSQSSVAEIS DEHSCAFGNT ADVSVSESHE DTLENGMSVP SDFNSGVEKL
0801: AGDASPTCSK CDDHISHEGF HDLSGLDNAT TDIVPNVELD VSDNDNDTSS GGVNHAVSLS STRGKGSLPW ISTNTYQSSS DAGEIFHDTV VESDGTLLED
0901: NNPESEIKMH KSPLEVSSEG LSTEPDNKDV ESIESTSPKP SLDQRNRDTE TKSPGESILD DNCIDSTQVY NLNLLESEAI DQAVREQTSY ASHEVADEEL
1001: LQSNVFRGLE FEPQSAGLEF APQSAGIELN RPKQELNLDP TFPSFGFIPE TIPPNPEDMP PLPPMQWLIG KVPHSFPTFM GESVETSSSA LSAAPPIGSS
1101: LNVQIGSPPS ELSVSLGSDE SERLPGGFVH NASEKPLQSS IQFPTMSTDL NSQYDSSELP TIPYQECIED FGSEENNLLA DHAAQNHELV YSQASSLQLP
1201: QVKHEDFKDD ADVHESQSSS DDHHCPETKS LTPTQSTKVE DKGHSVPDAS NAETAESSNT SVQKINPVSV GDAMWPVSCF SVAPTLDTYK TEVVPTVRLP
1301: RPRSPLVDAV AAHDRRKMKK VSEMVHPPIK SKQDDKDSLL AQIRNKSVNL KPAVTTRPSI QTGPRTDLRV AAILEKANTI RMAMAGSDED EDSDSWSDS
Arabidopsis Description
SCAR2Protein SCAR2 [Source:UniProtKB/Swiss-Prot;Acc:Q5XPJ9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.