Factsheet for VIT_08s0058g00780.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_00s0211g00050.t01
VIT_04s0023g03860.t01
VIT_10s0003g00570.t01
VIT_11s0016g00100.t01
VIT_15s0021g01130.t01
VIT_16s0098g01720.t01
VIT_17s0000g07890.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G38440.1	VIT_00s0211g00050.t01	AT2G22640.1	16043432
AT2G38440.1	VIT_00s0211g00050.t01	AT2G22640.1	17267444
AT2G38440.1	VIT_15s0021g01130.t01	AT2G44690.1	17267444
AT2G38440.1	VIT_16s0098g01720.t01	AT3G49290.1	17267444
AT2G38440.1	VIT_11s0016g00100.t01	AT4G16340.1	17267444
AT2G38440.1	VIT_04s0023g03860.t01	AT4G35950.1	17267444
AT2G38440.1	VIT_10s0003g00570.t01	AT5G45970.1	17267444
AT2G38440.1	VIT_17s0000g07890.t01	AT5G62880.1	17267444

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH00374	Soybean	cytosol	59.83	15.59
CDY69042	Canola	nucleus	52.02	15.1
KRH40820	Soybean	cytosol	58.96	15.0
VIT_10s0003g01270.t01	Wine grape	cytosol	38.73	14.27
AT2G38440.1	Thale cress	cytosol	54.34	13.44
KRH65511	Soybean	cytosol	63.87	13.09
CDX91460	Canola	cytosol	52.89	13.09
Solyc09g014980.2.1	Tomato	cytosol	64.45	13.09
KRH76068	Soybean	cytosol	63.29	12.93
Bra005107.1-P	Field mustard	cytosol	52.6	12.75
Zm00001d028803_P002	Maize	nucleus	39.31	11.4
EER92402	Sorghum	nucleus	42.49	11.3
Os03t0298700-01	Rice	cytosol	41.33	10.97
Zm00001d047701_P002	Maize	nucleus	40.17	10.79
HORVU4Hr1G055030.24	Barley	nucleus	39.02	10.23
GSMUA_Achr9P04670_001	Banana	cytosol	36.71	10.17
TraesCS4D01G190300.1	Wheat	nucleus	37.86	10.05
TraesCS4A01G115200.1	Wheat	nucleus	37.57	9.9
GSMUA_Achr6P32700_001	Banana	cytosol	39.31	9.23
VIT_08s0058g00770.t01	Wine grape	cytosol	3.18	7.75
TraesCS4B01G189000.1	Wheat	nucleus	13.58	4.01

Protein Annotations

Gene3D:1.20.5.340	Gene3D:1.20.58.1570	MapMan:20.2.2.2.4	ProteinID:CBI18082	ProteinID:CBI18082.3	UniProt:D7SR37
EMBL:FN594967	GO:GO:0000166	GO:GO:0003674	GO:GO:0003779	GO:GO:0003824	GO:GO:0005488
GO:GO:0005515	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005856
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016043	GO:GO:0016874
GO:GO:0030036	PANTHER:PTHR12902	PANTHER:PTHR12902:SF12	InterPro:SCAR/WAVE_fam	UniParc:UPI0001BE1453	ArrayExpress:VIT_08s0058g00780
EnsemblPlantsGene:VIT_08s0058g00780	EnsemblPlants:VIT_08s0058g00780.t01	unigene:Vvi.12869	SEG:seg	:	:

Description

No Description!

Coordinates

chr8:-:9915198..9920548

Molecular Weight (calculated)

38803.2 Da

IEP (calculated)

6.447

GRAVY (calculated)

-0.515

Length

346 amino acids

Sequence
(BLAST)

001: MPLTRYQVRN QYSLADPELF RAADKDDPEA LLEGVAMAGL VGVLRQLGDL AEFAAEIFHD LHEEVMVTAA RGHGLMVRVQ QLEAEFPLIE RAFLSQTNHS
101: SFFYNAGVDW HPNLHADQNL ITRGDLPRFV MDSYEECRGP PRLFLLDKFD VAGAGACLKR YTDPSFFKAE SASSGAVKLQ VQREKKIRKG KKKGYRWRNG
201: ETPEVLPATH AKLHQLFLVD RVENGTDGPA RLVKLKKRQL NESPFDSKTG RSYMEQFLET HSPEQEVVHE ICVSPPSLKL ASNSGHEPGL EILEISTVSP
301: SKESLQRKSS SPRGQEKVQR PFMDEVVEEA IDGAILKVPE SNPEAK

Best Arabidopsis Sequence Match ( AT2G38440.1 )
(BLAST)

0001: MPLTRYQSRN EYGLADPDLY QAADKDDPEA LLEGVAMAGL VGILRQLGDL AEFAAEMFHD LHEEVMATAS RSHGLMARVQ QLEAEFPSIE KALLCQTDHS
0101: PFFSNKGVEW HPNLQLEQSV VTSGDLPRCV MDSYEECRGP PRLFLLDKFD ISGAGACLKR YTDPSFVRLE TSSYEESWDD IQREKKSQKA KRRASQWRNG
0201: GTPENALSSH AKLHELFLEE HLEAHHSDPA RVVKLKTRKL DGCSLISKSG ESYMEKFVQT RVDSKISYEI ITQNPGLLTW NMDSARDVVT DIPEISMVGA
0301: MDKSHGGSRA EVSFPSEQEN VANVNMNGGF IEKDIETVPE STYNEVRGTT ITQDSQTVLN GKPGFFQQRS YSEDLTSEAD NYVDAPATME SETETDDECR
0401: PKSRSDTLKD GNHHIYSDAV EERMEDPPQF SFSHSNGNTP VSENGRSSFG KKSTSYSYSD TASISIDDQS DGEKLSGCLP STSSFKSELV DSMSHVTPEA
0501: NKVSHDLNVQ ESVSSSNVDG QTSLSSNGTC SSPRPVSQND QSCSLTVQSL ASEVVETSPE LVRLDLMKGG NDGRKVDPFD SSKSCASFDA KNSDLPSETS
0601: SISSTSEGSR CDSTIEKNCM VASNLVNSGT SPQAFVDSQT GKQLPIADTD FETNSIVACS EVLANSGSDP EERDGRCLTG KLVPCSAGVG MEVSPDTPSK
0701: VCGPSSADGI HLKDTLDDET DCVSVTNVVV DVDSKNSVAD VGSQSSVADI DSQSSVAEIS DEHSCAFGNT ADVSVSESHE DTLENGMSVP SDFNSGVEKL
0801: AGDASPTCSK CDDHISHEGF HDLSGLDNAT TDIVPNVELD VSDNDNDTSS GGVNHAVSLS STRGKGSLPW ISTNTYQSSS DAGEIFHDTV VESDGTLLED
0901: NNPESEIKMH KSPLEVSSEG LSTEPDNKDV ESIESTSPKP SLDQRNRDTE TKSPGESILD DNCIDSTQVY NLNLLESEAI DQAVREQTSY ASHEVADEEL
1001: LQSNVFRGLE FEPQSAGLEF APQSAGIELN RPKQELNLDP TFPSFGFIPE TIPPNPEDMP PLPPMQWLIG KVPHSFPTFM GESVETSSSA LSAAPPIGSS
1101: LNVQIGSPPS ELSVSLGSDE SERLPGGFVH NASEKPLQSS IQFPTMSTDL NSQYDSSELP TIPYQECIED FGSEENNLLA DHAAQNHELV YSQASSLQLP
1201: QVKHEDFKDD ADVHESQSSS DDHHCPETKS LTPTQSTKVE DKGHSVPDAS NAETAESSNT SVQKINPVSV GDAMWPVSCF SVAPTLDTYK TEVVPTVRLP
1301: RPRSPLVDAV AAHDRRKMKK VSEMVHPPIK SKQDDKDSLL AQIRNKSVNL KPAVTTRPSI QTGPRTDLRV AAILEKANTI RMAMAGSDED EDSDSWSDS

Arabidopsis Description

SCAR2Protein SCAR2 [Source:UniProtKB/Swiss-Prot;Acc:Q5XPJ9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.