Factsheet for VIT_10s0003g00570.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 2
golgi 1
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	plastid
iPSORT:	secretory
MultiLoc:	cytosol
Plant-mPloc:	cytosol, nucleus, plasma membrane
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_08s0058g00780.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G45970.1	VIT_08s0058g00780.t01	AT2G38440.1	17267444

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_12s0028g02630.t01	Wine grape	cytosol, nucleus, plastid	81.87	71.43
Solyc02g077400.2.1	Tomato	cytosol, plastid	79.53	69.04
PGSC0003DMT400027852	Potato	cytosol	79.53	69.04
KRH50139	Soybean	cytosol, nucleus, plastid	77.78	67.86
Os02t0312600-01	Rice	cytosol	77.78	67.51
VIT_03s0038g02380.t01	Wine grape	cytosol	77.19	66.67
Bra025045.1-P	Field mustard	cytosol	77.78	66.17
CDY58056	Canola	cytosol	77.78	66.17
VIT_18s0001g14670.t01	Wine grape	cytosol	76.02	65.99
VIT_04s0023g03860.t01	Wine grape	cytosol	75.44	65.82
CDY57346	Canola	cytosol	77.19	65.67
CDX77623	Canola	cytosol	77.19	65.67
AT5G45970.1	Thale cress	cytosol	77.19	65.67
Bra022004.1-P	Field mustard	cytosol	76.02	64.68
CDY67441	Canola	cytosol	75.44	64.5
KRH20356	Soybean	cytosol	77.19	61.97
VIT_15s0021g01130.t01	Wine grape	cytosol	70.18	60.61
VIT_11s0016g03640.t01	Wine grape	cytosol, nucleus, plasma membrane	68.42	55.71
VIT_17s0000g07890.t01	Wine grape	cytosol	66.08	53.81

Protein Annotations

MapMan:27.4.1	Gene3D:3.40.50.300	ProteinID:CBI30636	ProteinID:CBI30636.3	UniProt:D7TJG4	EMBL:FN595992
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005886	GO:GO:0007154	GO:GO:0007165
GO:GO:0007264	GO:GO:0008150	GO:GO:0009987	GO:GO:0016020	GO:GO:0016787	InterPro:IPR003578
InterPro:P-loop_NTPase	PFAM:PF00071	PRINTS:PR00449	PFscan:PS51420	PANTHER:PTHR24072	PANTHER:PTHR24072:SF178
SMART:SM00173	SMART:SM00174	SMART:SM00175	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase
InterPro:Small_GTPase_Rho	TIGRFAMs:TIGR00231	UniParc:UPI0001BE373F	ArrayExpress:VIT_10s0003g00570	EnsemblPlantsGene:VIT_10s0003g00570	EnsemblPlants:VIT_10s0003g00570.t01

Description

No Description!

Coordinates

chr10:-:1814233..1815854

Molecular Weight (calculated)

18967.4 Da

IEP (calculated)

6.095

GRAVY (calculated)

-0.227

Length

171 amino acids

Sequence
(BLAST)

001: MSTARFIKCV TVGDGAVGKT CMLISYTSNT FPTDYVPTVF DNFSANVVVD GSTVNLGLWD TAGQEDYNRL RPLSYRGADV FLLAFSLISK ASYENISKKW
101: IPELRHYAPT VPIVLVGTKL DLRDDKQYLI NHPGATPISS AQARRGTEED DWGSHLHRMQ LQNSTECEGC V

Best Arabidopsis Sequence Match ( AT1G75840.1 )
(BLAST)

001: MSASRFIKCV TVGDGAVGKT CMLISYTSNT FPTDYVPTVF DNFSANVVVD GNTVNLGLWD TAGQEDYNRL RPLSYRGADV FILAFSLISK ASYENVAKKW
101: IPELRHYAPG VPIILVGTKL DLRDDKQFFI DHPGAVPITT NQGEELKKLI GSPIYIECSS KTQQNVKAVF DAAIKVVLQP PKQKKKKKNK NRCVFL

Arabidopsis Description

ARAC5Rac-like GTP-binding protein ARAC5 [Source:UniProtKB/Swiss-Prot;Acc:Q38937]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.