Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- plastid 2
- mitochondrion 2
- cytosol 3
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_08s0058g00770.t01 | |
| VIT_08s0058g00780.t01 | |
| VIT_11s0016g00100.t01 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc01g088780.2.1 | Tomato | cytosol | 87.88 | 83.65 |
| PGSC0003DMT400004254 | Potato | cytosol | 87.37 | 83.17 |
| VIT_12s0028g02630.t01 | Wine grape | cytosol, nucleus, plastid | 81.31 | 82.14 |
| CDY71169 | Canola | plastid | 87.37 | 81.99 |
| Bra004857.1-P | Field mustard | plastid | 86.87 | 81.52 |
| CDY48250 | Canola | plastid | 87.37 | 81.22 |
| VIT_18s0001g14670.t01 | Wine grape | cytosol | 80.3 | 80.71 |
| VIT_03s0038g02380.t01 | Wine grape | cytosol | 79.8 | 79.8 |
| VIT_04s0023g03860.t01 | Wine grape | cytosol | 78.79 | 79.59 |
| AT2G44690.1 | Thale cress | plastid | 82.83 | 78.47 |
| VIT_10s0003g00570.t01 | Wine grape | cytosol | 60.61 | 70.18 |
| VIT_17s0000g07890.t01 | Wine grape | cytosol | 73.23 | 69.05 |
| VIT_11s0016g03640.t01 | Wine grape | cytosol, nucleus, plasma membrane | 72.73 | 68.57 |
Protein Annotations
| EntrezGene:100256456 | wikigene:100256456 | MapMan:27.4.1 | Gene3D:3.40.50.300 | ProteinID:CBI16695 | ProteinID:CBI16695.3 |
| UniProt:D7SM17 | EMBL:FN594952 | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0003924 |
| GO:GO:0005488 | GO:GO:0005525 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0007154 |
| GO:GO:0007165 | GO:GO:0007264 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016787 |
| InterPro:IPR003578 | EntrezGene:LOC100256456 | wikigene:LOC100256456 | InterPro:P-loop_NTPase | PFAM:PF00071 | PRINTS:PR00449 |
| PFscan:PS51420 | PANTHER:PTHR24072 | PANTHER:PTHR24072:SF160 | SMART:SM00173 | SMART:SM00174 | SMART:SM00175 |
| SUPFAM:SSF52540 | InterPro:Small_GTP-bd_dom | InterPro:Small_GTPase | InterPro:Small_GTPase_Rho | TIGRFAMs:TIGR00231 | UniParc:UPI0001984EA0 |
| ArrayExpress:VIT_15s0021g01130 | EnsemblPlantsGene:VIT_15s0021g01130 | EnsemblPlants:VIT_15s0021g01130.t01 | unigene:Vvi.16232 | RefSeq:XP_002269907 | RefSeq:XP_002269907.1 |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chr15:+:11160498..11164660
Molecular Weight (calculated)
22061.6 Da
IEP (calculated)
9.383
GRAVY (calculated)
-0.175
Length
198 amino acids
Sequence
(BLAST)
(BLAST)
001: MSTVPSRFIK CVTVGDGAVG KTCLLISYTS NTFPTDYVPT VFDNFSANVL ADGQTINLGL WDTAGQEDYN RLRPLSYRGA DVFLLAFSLI SRPSFENISK
101: KWVPELRHYA PSVPIVLVGT KLDLREDKQF HMDYPGACTI STEQGEELKK QIGALAYIEC SSKTQQNVKA VFDAAIKVVL QPPKLSKRKR KKRACHVL
101: KWVPELRHYA PSVPIVLVGT KLDLREDKQF HMDYPGACTI STEQGEELKK QIGALAYIEC SSKTQQNVKA VFDAAIKVVL QPPKLSKRKR KKRACHVL
001: MSASMAATST SSATATTFIK CVTVGDGAVG KTCLLISYTS NTFPTDYVPT VFDNFNANVL VDGKTVNLGL WDTAGQEDYN RVRPLSYRGA DVFILAFSLI
101: SRPSFENIAK KWVPELRHYA PTVPIVLVGT KSDLRDNMQF PKNYPGACTI FPEQGQELRK EIGALAYIEC SSKAQMNVKA VFDEAIKVVL HPPSKTKKRK
201: RKIGLCHVL
101: SRPSFENIAK KWVPELRHYA PTVPIVLVGT KSDLRDNMQF PKNYPGACTI FPEQGQELRK EIGALAYIEC SSKAQMNVKA VFDEAIKVVL HPPSKTKKRK
201: RKIGLCHVL
Arabidopsis Description
ARAC9ROP8 [Source:UniProtKB/TrEMBL;Acc:A0A178VUK9]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.