CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
plastid 5
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
Predotar:	plastid
PProwler:	plastid
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX78876
CDX90172
CDX91460
CDX99451
CDY32235
CDY34451
CDY43322
CDY69042

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G44690.1	CDX90172	AT1G29170.1	17267444
AT2G44690.1	CDY43322	AT1G29170.1	17267444
AT2G44690.1	CDX91460	AT2G38440.1	17267444
AT2G44690.1	CDY69042	AT2G38440.1	17267444
AT2G44690.1	CDY32235	AT4G16340.1	17267444
AT2G44690.1	CDY34451	AT4G16340.1	17267444
AT2G44690.1	CDX78876	AT4G18600.1	17267444
AT2G44690.1	CDX99451	AT4G18600.1	17267444

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY71169	Canola	plastid	97.18	98.1
VIT_15s0021g01130.t01	Wine grape	cytosol	81.22	87.37
AT2G44690.1	Thale cress	plastid	84.98	86.6
Solyc01g088780.2.1	Tomato	cytosol	82.16	84.13
PGSC0003DMT400004254	Potato	cytosol	81.69	83.65
CDX68116	Canola	cytosol	74.65	81.54
CDX85925	Canola	cytosol	74.65	81.54
CDY13528	Canola	cytosol	74.18	80.61
CDY62937	Canola	cytosol	74.18	80.61
CDY39066	Canola	cytosol	74.18	80.61
CDY54338	Canola	cytosol	74.18	80.2
CDX87656	Canola	cytosol	73.71	80.1
CDY43414	Canola	cytosol	73.71	79.7
CDX73206	Canola	cytosol	73.24	79.59
CDX75480	Canola	cytosol	72.77	78.28
CDY26832	Canola	cytosol	71.36	77.16
CDY07816	Canola	cytosol	68.08	77.13
CDY31409	Canola	cytosol	64.32	76.54
CDY71157	Canola	cytosol	60.56	76.33
CDY30344	Canola	cytosol	70.42	76.14
CDX90652	Canola	cytosol, plastid	70.42	76.14
CDY33284	Canola	cytosol, plastid	70.42	76.14
CDY29012	Canola	cytosol, plastid	70.42	76.14
CDY57592	Canola	cytosol	72.77	75.98
CDX71303	Canola	cytosol	63.85	75.98
CDX77994	Canola	cytosol, plastid	69.95	75.63
CDY59617	Canola	cytosol, plastid	69.95	75.63
CDX73732	Canola	cytosol, plastid	69.95	75.63
CDY59407	Canola	cytosol, plastid	61.97	75.43
CDY20828	Canola	cytosol	69.48	75.13
CDY57346	Canola	cytosol	70.89	75.12
CDY58056	Canola	cytosol	70.89	75.12
CDX77623	Canola	cytosol	70.42	74.63
CDY67441	Canola	cytosol	69.95	74.5
CDY24378	Canola	cytosol	68.08	74.36
CDY29201	Canola	cytosol	68.08	72.86
CDX69104	Canola	cytosol	71.83	72.51
CDY02239	Canola	cytosol	50.7	69.23
CDY06854	Canola	cytosol	67.14	68.42
CDY35236	Canola	cytosol	66.67	67.94
CDY56740	Canola	cytosol	67.61	66.67
CDY45748	Canola	cytosol	66.2	66.2
CDX89745	Canola	cytosol	59.62	66.15
CDY00332	Canola	cytosol	66.67	66.05
CDY30738	Canola	cytosol	66.67	66.05
CDY02240	Canola	cytosol	58.22	65.26
CDY68200	Canola	cytosol	54.93	64.64
CDY69676	Canola	cytosol	26.29	63.64
CDX89746	Canola	cytosol	64.32	61.71

Protein Annotations

MapMan:27.4.1	Gene3D:3.40.50.300	GO:A0A078IBI6	UniProt:A0A078IBI6	EnsemblPlants:CDY48250	ProteinID:CDY48250
ProteinID:CDY48250.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488
GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0007154	GO:GO:0007165
GO:GO:0007264	GO:GO:0008150	GO:GO:0009987	GO:GO:0016020	GO:GO:0016787	EnsemblPlantsGene:GSBRNA2T00089116001
InterPro:IPR003578	InterPro:P-loop_NTPase	PFAM:PF00071	PRINTS:PR00449	PFscan:PS51420	PANTHER:PTHR24072
PANTHER:PTHR24072:SF160	SMART:SM00173	SMART:SM00174	SMART:SM00175	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom
InterPro:Small_GTPase	InterPro:Small_GTPase_Rho	TIGRFAMs:TIGR00231	UniParc:UPI0004EF2BDB	SEG:seg	:

Description

BnaC04g05090DBnaC04g05090D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IBI6]

Coordinates

chrLK032762:+:57446..58926

Molecular Weight (calculated)

23295.1 Da

IEP (calculated)

9.168

GRAVY (calculated)

-0.007

Length

213 amino acids

Sequence
(BLAST)

001: MSASVAAASV STTTTTTAAT TFIKCVTVGD GAVGKTCLLI SYTSNTFPTD YVPTVFDNFS ANVLVDGKTV NLGLWDTAGQ EDYNRLRPLS YRGADVFILA
101: FSLISRPSFE NIAKKWVPEL RHYAPNVPIV LVGTKLDLRE DKKFPMNYPG ACTISTEQGQ ELRKEIGALA YIECSSKTQQ NVKAVFDAAI KVVLQPPTKI
201: KKQKRIFGFC HAL

Best Arabidopsis Sequence Match ( AT2G44690.1 )
(BLAST)

001: MSASMAATST SSATATTFIK CVTVGDGAVG KTCLLISYTS NTFPTDYVPT VFDNFNANVL VDGKTVNLGL WDTAGQEDYN RVRPLSYRGA DVFILAFSLI
101: SRPSFENIAK KWVPELRHYA PTVPIVLVGT KSDLRDNMQF PKNYPGACTI FPEQGQELRK EIGALAYIEC SSKAQMNVKA VFDEAIKVVL HPPSKTKKRK
201: RKIGLCHVL

Arabidopsis Description

ARAC9ROP8 [Source:UniProtKB/TrEMBL;Acc:A0A178VUK9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.