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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 1
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • plasma membrane 1
  • golgi 1
  • cytosol 3
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, nucleus
BaCelLo:nucleus
iPSORT:secretory
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
CDX70816
CDY32235
CDY34451
CDY51228

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G20090.1 CDY32235 AT4G16340.1 17267444
AT1G20090.1 CDY34451 AT4G16340.1 17267444
AT1G20090.1 CDX70816 AT5G18410.1 15294869
AT1G20090.1 CDY51228 AT5G18410.1 15294869
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY43414 Canola cytosol 95.59 98.98
CDY62937 Canola cytosol 94.61 98.47
Bra012210.1-P Field mustard cytosol 94.61 97.97
CDY54338 Canola cytosol 94.61 97.97
AT1G20090.1 Thale cress cytosol 93.63 97.95
CDY39066 Canola cytosol 93.14 96.94
CDY13528 Canola cytosol 93.14 96.94
CDX68116 Canola cytosol 91.18 95.38
CDX85925 Canola cytosol 91.18 95.38
CDX73206 Canola cytosol 90.69 94.39
CDX87656 Canola cytosol 90.2 93.88
VIT_18s0001g14670.t01 Wine grape cytosol 87.75 90.86
KRH51687 Soybean cytosol, nucleus, plastid 87.25 90.36
KRH61026 Soybean cytosol, nucleus, plastid 86.27 89.34
KRH61024 Soybean cytosol 85.78 89.29
TraesCS6A01G070700.2 Wheat cytosol 85.78 88.83
TraesCS6B01G094700.2 Wheat cytosol 85.78 88.83
TraesCS6D01G068500.2 Wheat cytosol 85.78 88.83
EES06186 Sorghum cytosol 85.29 88.32
Os02t0120800-01 Rice plasma membrane 85.29 88.32
Zm00001d015036_P005 Maize cytosol 85.29 88.32
CDY07816 Canola cytosol 79.41 86.17
CDY31409 Canola cytosol 75.49 86.03
CDX75480 Canola cytosol 83.33 85.86
CDY71157 Canola cytosol 71.08 85.8
CDY33284 Canola cytosol, plastid 82.84 85.79
CDY26832 Canola cytosol 82.84 85.79
CDY59407 Canola cytosol, plastid 73.53 85.71
CDX71303 Canola cytosol 75.0 85.47
CDX77994 Canola cytosol, plastid 82.35 85.28
CDY29012 Canola cytosol, plastid 82.35 85.28
CDX73732 Canola cytosol, plastid 82.35 85.28
CDY59617 Canola cytosol, plastid 82.35 85.28
CDX90652 Canola cytosol, plastid 81.86 84.77
CDY30344 Canola cytosol 81.37 84.26
CDY20828 Canola cytosol 80.88 83.76
CDY24378 Canola cytosol 79.41 83.08
CDY29201 Canola cytosol 79.41 81.41
CDY57346 Canola cytosol 78.92 80.1
CDY58056 Canola cytosol 78.92 80.1
CDX77623 Canola cytosol 78.43 79.6
CDX69104 Canola cytosol 81.86 79.15
CDY67441 Canola cytosol 77.45 79.0
CDY69676 Canola cytosol 33.82 78.41
CDY02239 Canola cytosol 56.37 73.72
CDY71169 Canola plastid 75.98 73.46
CDY48250 Canola plastid 75.98 72.77
CDY06854 Canola cytosol 74.02 72.25
CDY35236 Canola cytosol 73.53 71.77
Zm00001d053899_P001 Maize cytosol 81.37 71.55
CDY45748 Canola cytosol 74.02 70.89
CDY56740 Canola cytosol 75.0 70.83
CDY00332 Canola cytosol 74.51 70.7
CDY30738 Canola cytosol 74.51 70.7
CDX89745 Canola cytosol 65.2 69.27
CDY02240 Canola cytosol 64.22 68.95
CDY68200 Canola cytosol 60.78 68.51
CDX89746 Canola cytosol 69.12 63.51
HORVU6Hr1G012690.3 Barley plastid 86.27 62.19
Protein Annotations
MapMan:27.4.1Gene3D:3.40.50.300GO:A0A078J2F8UniProt:A0A078J2F8EnsemblPlants:CDY57592ProteinID:CDY57592
ProteinID:CDY57592.1GO:GO:0000166GO:GO:0003674GO:GO:0003824GO:GO:0003924GO:GO:0005488
GO:GO:0005525GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0007154GO:GO:0007165
GO:GO:0007264GO:GO:0008150GO:GO:0009987GO:GO:0016020GO:GO:0016787EnsemblPlantsGene:GSBRNA2T00022396001
InterPro:IPR003578InterPro:P-loop_NTPasePFAM:PF00071PRINTS:PR00449PFscan:PS51420PANTHER:PTHR24072
PANTHER:PTHR24072:SF249SMART:SM00173SMART:SM00174SMART:SM00175SUPFAM:SSF52540InterPro:Small_GTP-bd_dom
InterPro:Small_GTPaseInterPro:Small_GTPase_RhoTIGRFAMs:TIGR00231UniParc:UPI0004EEC99BSEG:seg:
Description
BnaAnng14680DBnaAnng14680D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J2F8]
Coordinates
chrLK033587:-:9361..10645
Molecular Weight (calculated)
22713.5 Da
IEP (calculated)
9.362
GRAVY (calculated)
-0.104
Length
204 amino acids
Sequence
(BLAST)
001: MSASRFIKCV TVGDGAVGKT CMLISYTSNT FPTDYVPTVF DNFSANVVVD GNTVNLGLWD TVLEHSVFTC QEDYNRLRPL SYRGADVFLL AFSLISKASY
101: ENIAKKWIPE LRHYAPGVPI ILVGTKLDLR DDKQFFIDHP GAVPITTNQG EELKKLIGSA VYIECSSKTQ QNVKAVFDAA IKVVLQPPKQ KKTKKKNKNR
201: CAFL
Best Arabidopsis Sequence Match ( AT1G20090.1 )
(BLAST)
001: MASRFIKCVT VGDGAVGKTC MLISYTSNTF PTDYVPTVFD NFSANVVVDG NTVNLGLWDT AGQEDYNRLR PLSYRGADVF ILAFSLISKA SYENIAKKWI
101: PELRHYAPGV PIILVGTKLD LRDDKQFFID HPGAVPITTN QGEELKKLIG SAVYIECSSK TQQNVKAVFD AAIKVVLQPP KQKKKKKNKN RCAFL
Arabidopsis Description
ARAC4RAC-like GTP-binding protein ARAC4 [Source:UniProtKB/TrEMBL;Acc:Q0WU07]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.