Factsheet for TraesCS6D01G068500.2

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plastid
iPSORT:	secretory
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS4A01G131100.1
TraesCS4A01G408900.2
TraesCS4B01G173500.4
TraesCS4B01G308000.2
TraesCS4D01G175600.4
TraesCS4D01G306200.4
TraesCS5A01G195400.1
TraesCS5D01G127700.1
TraesCS6A01G282400.1
TraesCS6B01G310800.1
TraesCS6D01G262900.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G20090.1	TraesCS4A01G131100.1	AT4G16340.1	17267444
AT1G20090.1	TraesCS4B01G173500.4	AT4G16340.1	17267444
AT1G20090.1	TraesCS4D01G175600.4	AT4G16340.1	17267444
AT1G20090.1	TraesCS5A01G195400.1	AT4G16340.1	17267444
AT1G20090.1	TraesCS5D01G127700.1	AT4G16340.1	17267444
AT1G20090.1	TraesCS4A01G408900.2	AT5G18410.1	15294869
AT1G20090.1	TraesCS4B01G308000.2	AT5G18410.1	15294869
AT1G20090.1	TraesCS4D01G306200.4	AT5G18410.1	15294869
AT1G75840.1	TraesCS6A01G282400.1	AT3G07880.1	10798620
AT1G75840.1	TraesCS6B01G310800.1	AT3G07880.1	10798620
AT1G75840.1	TraesCS6D01G262900.1	AT3G07880.1	10798620

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6B01G094700.2	Wheat	cytosol	100.0	100.0
TraesCS6A01G070700.2	Wheat	cytosol	100.0	100.0
Zm00001d015036_P005	Maize	cytosol	98.48	98.48
Os02t0120800-01	Rice	plasma membrane	98.48	98.48
EES06186	Sorghum	cytosol	98.48	98.48
VIT_18s0001g14670.t01	Wine grape	cytosol	92.39	92.39
AT1G75840.1	Thale cress	cytosol	90.36	90.82
Bra008227.1-P	Field mustard	cytosol	89.85	90.31
KRH61024	Soybean	cytosol	89.85	90.31
CDY13528	Canola	cytosol	89.85	90.31
CDY39066	Canola	cytosol	89.85	90.31
KRH61026	Soybean	cytosol, nucleus, plastid	89.85	89.85
KRH51687	Soybean	cytosol, nucleus, plastid	89.85	89.85
CDY43414	Canola	cytosol	89.85	89.85
CDY54338	Canola	cytosol	89.85	89.85
CDY62937	Canola	cytosol	89.34	89.8
CDX73206	Canola	cytosol	89.34	89.8
Bra016477.1-P	Field mustard	cytosol	89.34	89.8
CDX85925	Canola	cytosol	88.83	89.74
CDX68116	Canola	cytosol	88.83	89.74
Bra003739.1-P	Field mustard	cytosol	88.83	89.74
TraesCS1D01G325200.1	Wheat	cytosol	89.34	89.34
AT1G20090.1	Thale cress	cytosol	88.32	89.23
Bra012210.1-P	Field mustard	cytosol	88.83	88.83
CDX87656	Canola	cytosol	88.32	88.78
Bra015807.1-P	Field mustard	cytosol	88.32	88.78
CDY57592	Canola	cytosol	88.83	85.78
Zm00001d053899_P001	Maize	cytosol	92.89	78.88
TraesCS6D01G288300.1	Wheat	cytosol	81.22	75.12
TraesCS7D01G192400.1	Wheat	cytosol	79.7	73.71
TraesCS1D01G336200.1	Wheat	cytosol	76.65	71.23
HORVU6Hr1G012690.3	Barley	plastid	99.49	69.26
TraesCS3D01G161900.1	Wheat	cytosol	71.07	64.22

Protein Annotations

MapMan:27.4.1	Gene3D:3.40.50.300	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924
GO:GO:0005488	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0007154
GO:GO:0007165	GO:GO:0007264	GO:GO:0008150	GO:GO:0009987	GO:GO:0016787	InterPro:IPR003578
InterPro:P-loop_NTPase	PFAM:PF00071	PRINTS:PR00449	PFscan:PS51420	PANTHER:PTHR24072	PANTHER:PTHR24072:SF261
SMART:SM00173	SMART:SM00174	SMART:SM00175	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase
InterPro:Small_GTPase_Rho	TIGRFAMs:TIGR00231	EnsemblPlantsGene:TraesCS6D01G068500	EnsemblPlants:TraesCS6D01G068500.2	TIGR:cd04133	SEG:seg

Description

No Description!

Coordinates

chr6D:+:34394981..34397822

Molecular Weight (calculated)

21525.1 Da

IEP (calculated)

9.493

GRAVY (calculated)

-0.034

Length

197 amino acids

Sequence
(BLAST)

001: MSASRFIKCV TVGDGAVGKT CMLISYTSNT FPTDYVPTVF DNFSANVVVD GNTVNLGLWD TAGQEDYNRL RPLSYRGADV FLLAFSLISK ASYENVSKKW
101: IPELKHYAPG VPIILVGTKL DLRDDKQFFV DHPGAVPITT AQGEELKKLI GAPYYIECSS KTQLNVKGVF DAAIKVVLAP PKAKKKKKAQ RGACSIL

Best Arabidopsis Sequence Match ( AT2G17800.2 )
(BLAST)

001: MSASRFIKCV TVGDGAVGKT CLLISYTSNT FPTDYVPTVF DNFSANVVVN GATVNLGLWD TAGQEDYNRL RPLSYRGADV FILAFSLISK ASYENVSKKW
101: IPELKHYAPG VPIVLVGTKL DLRDDKQFFI DHPGAVPITT AQGEELKKLI GAPAYIECSS KTQENVKGVF DAAIRVVLQP PKQKKKKSKA QKACSIL

Arabidopsis Description

ARAC1ROP3 [Source:UniProtKB/TrEMBL;Acc:A0A178VRA4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.