CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 2
golgi 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	plastid
iPSORT:	secretory
MultiLoc:	cytosol
Plant-mPloc:	cytosol, nucleus, plasma membrane
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
KXG19891
KXG39465
OQU85511
OQU93249

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G20090.1	KXG39465	AT4G16340.1	17267444
AT1G20090.1	OQU93249	AT5G18410.1	15294869
AT1G75840.1	KXG19891	AT3G07880.1	10798620
AT1G75840.1	OQU85511	AT3G07880.1	10798620

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d015036_P005	Maize	cytosol	100.0	100.0
Os02t0120800-01	Rice	plasma membrane	100.0	100.0
TraesCS6D01G068500.2	Wheat	cytosol	98.48	98.48
TraesCS6B01G094700.2	Wheat	cytosol	98.48	98.48
TraesCS6A01G070700.2	Wheat	cytosol	98.48	98.48
VIT_18s0001g14670.t01	Wine grape	cytosol	92.39	92.39
KRH61024	Soybean	cytosol	90.36	90.82
KRH61026	Soybean	cytosol, nucleus, plastid	90.36	90.36
KRH51687	Soybean	cytosol, nucleus, plastid	90.36	90.36
AT1G75840.1	Thale cress	cytosol	89.85	90.31
CDY13528	Canola	cytosol	89.34	89.8
CDY39066	Canola	cytosol	89.34	89.8
Bra008227.1-P	Field mustard	cytosol	89.34	89.8
CDY43414	Canola	cytosol	89.34	89.34
CDY54338	Canola	cytosol	89.34	89.34
CDX87656	Canola	cytosol	88.83	89.29
CDY62937	Canola	cytosol	88.83	89.29
Bra015807.1-P	Field mustard	cytosol	88.83	89.29
Bra016477.1-P	Field mustard	cytosol	88.83	89.29
CDX73206	Canola	cytosol	88.83	89.29
Bra003739.1-P	Field mustard	cytosol	88.32	89.23
CDX68116	Canola	cytosol	88.32	89.23
CDX85925	Canola	cytosol	88.32	89.23
AT1G20090.1	Thale cress	cytosol	87.82	88.72
Bra012210.1-P	Field mustard	cytosol	88.32	88.32
CDY57592	Canola	cytosol	88.32	85.29
EES05544	Sorghum	cytosol	82.74	76.17
EER88130	Sorghum	cytosol	82.23	75.35
EES18497	Sorghum	cytosol	78.17	72.64
HORVU6Hr1G012690.3	Barley	plastid	98.98	68.9
KXG31438	Sorghum	cytosol	71.57	66.82
EES19253	Sorghum	cytosol	72.08	65.74

Protein Annotations

MapMan:27.4.1	Gene3D:3.40.50.300	EntrezGene:8068254	UniProt:C5XT00	EnsemblPlants:EES06186	ProteinID:EES06186
ProteinID:EES06186.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488
GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005886	GO:GO:0007154
GO:GO:0007165	GO:GO:0007264	GO:GO:0008150	GO:GO:0009987	GO:GO:0016020	GO:GO:0016787
InterPro:IPR003578	InterPro:P-loop_NTPase	PFAM:PF00071	PRINTS:PR00449	PFscan:PS51420	PANTHER:PTHR24072
PANTHER:PTHR24072:SF261	SMART:SM00173	SMART:SM00174	SMART:SM00175	EnsemblPlantsGene:SORBI_3004G017900	SUPFAM:SSF52540
unigene:Sbi.18901	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	InterPro:Small_GTPase_Rho	TIGRFAMs:TIGR00231	UniParc:UPI000000542A
RefSeq:XP_002453210.1	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr4:-:1410011..1413545

Molecular Weight (calculated)

21625.1 Da

IEP (calculated)

9.501

GRAVY (calculated)

-0.101

Length

197 amino acids

Sequence
(BLAST)

001: MSASRFIKCV TVGDGAVGKT CMLISYTSNT FPTDYVPTVF DNFSANVVVD GNTVNLGLWD TAGQEDYNRL RPLSYRGADV FLLAFSLISK ASYENVSKKW
101: IPELKHYAPG VPIILVGTKL DLRDDKQFFV DHPGAVPITT AQGEELRKQI GAPYYIECSS KTQLNVKGVF DAAIKVVLQP PKAKKKKKAQ RGACSIL

Best Arabidopsis Sequence Match ( AT3G51300.1 )
(BLAST)

001: MSASRFVKCV TVGDGAVGKT CLLISYTSNT FPTDYVPTVF DNFSANVVVN GSTVNLGLWD TAGQEDYNRL RPLSYRGADV FILAFSLISK ASYENVSKKW
101: IPELKHYAPG VPIVLVGTKL DLRDDKQFFI DHPGAVPITT AQGEELRKQI GAPTYIECSS KTQENVKAVF DAAIRVVLQP PKQKKKKSKA QKACSIL

Arabidopsis Description

ARAC11Rac-like GTP-binding protein ARAC11 [Source:UniProtKB/Swiss-Prot;Acc:P92978]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.