Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- cytosol 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G75840.1 | CDY28012 | AT3G07880.1 | 10798620 |
| AT1G75840.1 | CDY35970 | AT3G07880.1 | 10798620 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX87656 | Canola | cytosol | 98.98 | 98.98 |
| CDY39066 | Canola | cytosol | 96.43 | 96.43 |
| CDY13528 | Canola | cytosol | 96.43 | 96.43 |
| AT1G75840.1 | Thale cress | cytosol | 95.92 | 95.92 |
| CDY62937 | Canola | cytosol | 95.92 | 95.92 |
| CDY54338 | Canola | cytosol | 95.92 | 95.43 |
| CDX68116 | Canola | cytosol | 94.9 | 95.38 |
| CDX85925 | Canola | cytosol | 94.9 | 95.38 |
| CDY43414 | Canola | cytosol | 95.41 | 94.92 |
| VIT_18s0001g14670.t01 | Wine grape | cytosol | 92.35 | 91.88 |
| KRH51687 | Soybean | cytosol, nucleus, plastid | 91.84 | 91.37 |
| CDY57592 | Canola | cytosol | 94.39 | 90.69 |
| KRH61026 | Soybean | cytosol, nucleus, plastid | 90.82 | 90.36 |
| KRH61024 | Soybean | cytosol | 90.31 | 90.31 |
| TraesCS6D01G068500.2 | Wheat | cytosol | 89.8 | 89.34 |
| TraesCS6B01G094700.2 | Wheat | cytosol | 89.8 | 89.34 |
| TraesCS6A01G070700.2 | Wheat | cytosol | 89.8 | 89.34 |
| Zm00001d015036_P005 | Maize | cytosol | 89.29 | 88.83 |
| Os02t0120800-01 | Rice | plasma membrane | 89.29 | 88.83 |
| EES06186 | Sorghum | cytosol | 89.29 | 88.83 |
| CDY71157 | Canola | cytosol | 76.02 | 88.17 |
| CDY07816 | Canola | cytosol | 83.67 | 87.23 |
| CDY33284 | Canola | cytosol, plastid | 87.24 | 86.8 |
| CDY26832 | Canola | cytosol | 87.24 | 86.8 |
| CDX73732 | Canola | cytosol, plastid | 86.73 | 86.29 |
| CDY59617 | Canola | cytosol, plastid | 86.73 | 86.29 |
| CDX77994 | Canola | cytosol, plastid | 86.73 | 86.29 |
| CDY30344 | Canola | cytosol | 86.73 | 86.29 |
| CDY29012 | Canola | cytosol, plastid | 86.73 | 86.29 |
| CDY59407 | Canola | cytosol, plastid | 77.04 | 86.29 |
| CDX75480 | Canola | cytosol | 86.73 | 85.86 |
| CDX90652 | Canola | cytosol, plastid | 86.22 | 85.79 |
| CDY20828 | Canola | cytosol | 85.2 | 84.77 |
| CDY24378 | Canola | cytosol | 83.67 | 84.1 |
| CDX71303 | Canola | cytosol | 76.53 | 83.8 |
| CDY31409 | Canola | cytosol | 76.02 | 83.24 |
| CDY29201 | Canola | cytosol | 83.67 | 82.41 |
| CDY69676 | Canola | cytosol | 36.22 | 80.68 |
| CDX69104 | Canola | cytosol | 85.2 | 79.15 |
| CDY57346 | Canola | cytosol | 81.12 | 79.1 |
| CDY58056 | Canola | cytosol | 81.12 | 79.1 |
| CDX77623 | Canola | cytosol | 80.61 | 78.61 |
| CDY67441 | Canola | cytosol | 79.59 | 78.0 |
| CDY71169 | Canola | plastid | 79.59 | 73.93 |
| CDY48250 | Canola | plastid | 79.59 | 73.24 |
| CDY02239 | Canola | cytosol | 57.65 | 72.44 |
| CDY06854 | Canola | cytosol | 77.04 | 72.25 |
| Zm00001d053899_P001 | Maize | cytosol | 85.2 | 71.98 |
| CDY35236 | Canola | cytosol | 76.53 | 71.77 |
| CDY45748 | Canola | cytosol | 77.04 | 70.89 |
| CDY56740 | Canola | cytosol | 78.06 | 70.83 |
| CDY30738 | Canola | cytosol | 77.55 | 70.7 |
| CDY00332 | Canola | cytosol | 77.55 | 70.7 |
| CDX89745 | Canola | cytosol | 68.88 | 70.31 |
| CDY02240 | Canola | cytosol | 67.35 | 69.47 |
| CDY68200 | Canola | cytosol | 63.27 | 68.51 |
| CDX89746 | Canola | cytosol | 71.43 | 63.06 |
| HORVU6Hr1G012690.3 | Barley | plastid | 90.31 | 62.54 |
Protein Annotations
| MapMan:27.4.1 | Gene3D:3.40.50.300 | GO:A0A078C814 | EnsemblPlants:CDX73206 | ProteinID:CDX73206 | ProteinID:CDX73206.1 |
| GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0003924 | GO:GO:0005488 | GO:GO:0005525 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0007264 |
| GO:GO:0008150 | GO:GO:0009987 | GO:GO:0016787 | EnsemblPlantsGene:GSBRNA2T00103699001 | InterPro:IPR003578 | InterPro:P-loop_NTPase |
| PFAM:PF00071 | PRINTS:PR00449 | PFscan:PS51420 | PANTHER:PTHR24072 | PANTHER:PTHR24072:SF249 | SMART:SM00173 |
| SMART:SM00174 | SMART:SM00175 | SUPFAM:SSF52540 | InterPro:Small_GTP-bd_dom | InterPro:Small_GTPase | InterPro:Small_GTPase_Rho |
| TIGRFAMs:TIGR00231 | UniParc:UPI0004EEC8FE | SEG:seg | : | : | : |
Description
BnaC06g36540D
Coordinates
chrLK031797:+:2684474..2686148
Molecular Weight (calculated)
21677.3 Da
IEP (calculated)
9.119
GRAVY (calculated)
-0.053
Length
196 amino acids
Sequence
(BLAST)
(BLAST)
001: MSASRFIKCV TVGDGAVGKT CMLISYTSNT FPTDYVPTVF DNFSANVVVD GNTVNLGLWD TAGQEDYNRL RPLSYRGADV FILAFSLISK ASYENIAKKW
101: IPELRHYAPG VPIILVGTKL DLRDDKQFFI DHPGAVPITT NQGEELKKLI GSPVYIECSS KTQQNVKAVF DAAIKMVLQP PNQKKKKLNK SLCVIL
101: IPELRHYAPG VPIILVGTKL DLRDDKQFFI DHPGAVPITT NQGEELKKLI GSPVYIECSS KTQQNVKAVF DAAIKMVLQP PNQKKKKLNK SLCVIL
001: MSASRFIKCV TVGDGAVGKT CLLISYTSNT FPTDYVPTVF DNFSANVIVD GNTINLGLWD TAGQEDYNRL RPLSYRGADV FLLAFSLVSK ASYENVSKKW
101: VPELRHYAPG VPIILVGTKL DLRDDKQFFA EHPGAVPIST AQGEELKKLI GAPAYIECSA KTQQNVKAVF DAAIKVVLQP PKNKKKKKRK SQKGCSIL
101: VPELRHYAPG VPIILVGTKL DLRDDKQFFA EHPGAVPIST AQGEELKKLI GAPAYIECSA KTQQNVKAVF DAAIKVVLQP PKNKKKKKRK SQKGCSIL
Arabidopsis Description
ARAC3At4g35020 [Source:UniProtKB/TrEMBL;Acc:Q5PNX9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.