Subcellular Localization
min:
: max
Winner_takes_all: plastid, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- plastid 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G51300.1 | CDX68872 | AT4G32650.1 | 15299147 |
| AT3G51300.1 | CDX72366 | AT4G32650.1 | 15299147 |
| AT3G51300.1 | CDX75267 | AT4G32650.1 | 15299147 |
| AT3G51300.1 | CDY13496 | AT4G32650.1 | 15299147 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY59617 | Canola | cytosol, plastid | 96.57 | 85.79 |
| CDX73732 | Canola | cytosol, plastid | 96.57 | 85.79 |
| CDX77994 | Canola | cytosol, plastid | 96.57 | 85.79 |
| CDX90652 | Canola | cytosol, plastid | 96.0 | 85.28 |
| CDY29012 | Canola | cytosol, plastid | 96.0 | 85.28 |
| CDY33284 | Canola | cytosol, plastid | 96.0 | 85.28 |
| CDY07816 | Canola | cytosol | 91.43 | 85.11 |
| KRH08028 | Soybean | cytosol | 94.86 | 84.26 |
| AT3G51300.1 | Thale cress | cytosol, plastid | 94.86 | 84.26 |
| KRH69754 | Soybean | cytosol | 93.71 | 83.25 |
| KRH28825 | Soybean | cytosol | 93.14 | 82.74 |
| KRH76629 | Soybean | cytosol | 93.14 | 82.74 |
| CDY26832 | Canola | cytosol | 92.57 | 82.23 |
| CDY20828 | Canola | cytosol | 92.0 | 81.73 |
| CDY24378 | Canola | cytosol | 90.29 | 81.03 |
| CDY30344 | Canola | cytosol | 90.86 | 80.71 |
| CDY71157 | Canola | cytosol | 77.14 | 79.88 |
| VIT_04s0023g03860.t01 | Wine grape | cytosol | 89.14 | 79.59 |
| CDY29201 | Canola | cytosol | 89.14 | 78.39 |
| CDY54338 | Canola | cytosol | 88.0 | 78.17 |
| CDY62937 | Canola | cytosol | 87.43 | 78.06 |
| CDY13528 | Canola | cytosol | 86.86 | 77.55 |
| CDY39066 | Canola | cytosol | 86.86 | 77.55 |
| CDX68116 | Canola | cytosol | 86.29 | 77.44 |
| CDX85925 | Canola | cytosol | 86.29 | 77.44 |
| CDY43414 | Canola | cytosol | 86.86 | 77.16 |
| CDX73206 | Canola | cytosol | 86.29 | 77.04 |
| CDX87656 | Canola | cytosol | 85.71 | 76.53 |
| CDX75480 | Canola | cytosol | 85.71 | 75.76 |
| CDX71303 | Canola | cytosol | 76.0 | 74.3 |
| CDY31409 | Canola | cytosol | 75.43 | 73.74 |
| CDY57592 | Canola | cytosol | 85.71 | 73.53 |
| CDX69104 | Canola | cytosol | 85.14 | 70.62 |
| CDX77623 | Canola | cytosol | 80.0 | 69.65 |
| CDY57346 | Canola | cytosol | 79.43 | 69.15 |
| CDY58056 | Canola | cytosol | 79.43 | 69.15 |
| CDY67441 | Canola | cytosol | 77.71 | 68.0 |
| CDY71169 | Canola | plastid | 75.43 | 62.56 |
| CDY48250 | Canola | plastid | 75.43 | 61.97 |
| CDY06854 | Canola | cytosol | 73.71 | 61.72 |
| CDY02239 | Canola | cytosol | 54.86 | 61.54 |
| CDY35236 | Canola | cytosol | 73.14 | 61.24 |
| CDY56740 | Canola | cytosol | 75.43 | 61.11 |
| CDY45748 | Canola | cytosol | 73.14 | 60.09 |
| CDY30738 | Canola | cytosol | 73.71 | 60.0 |
| CDX89745 | Canola | cytosol | 65.71 | 59.9 |
| CDY00332 | Canola | cytosol | 73.14 | 59.53 |
| CDY02240 | Canola | cytosol | 64.57 | 59.47 |
| CDY68200 | Canola | cytosol | 60.0 | 58.01 |
| CDY69676 | Canola | cytosol | 28.57 | 56.82 |
| CDX89746 | Canola | cytosol | 69.71 | 54.95 |
Protein Annotations
| MapMan:27.4.1 | Gene3D:3.40.50.300 | GO:A0A078J5B7 | UniProt:A0A078J5B7 | EnsemblPlants:CDY59407 | ProteinID:CDY59407 |
| ProteinID:CDY59407.1 | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0003924 | GO:GO:0005488 |
| GO:GO:0005525 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0007154 | GO:GO:0007165 |
| GO:GO:0007264 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016787 | EnsemblPlantsGene:GSBRNA2T00026051001 |
| InterPro:IPR003578 | InterPro:P-loop_NTPase | PFAM:PF00071 | PRINTS:PR00449 | PFscan:PS51420 | PANTHER:PTHR24072 |
| PANTHER:PTHR24072:SF179 | SMART:SM00173 | SMART:SM00174 | SMART:SM00175 | SUPFAM:SSF52540 | InterPro:Small_GTP-bd_dom |
| InterPro:Small_GTPase | InterPro:Small_GTPase_Rho | TIGRFAMs:TIGR00231 | UniParc:UPI0004EDB59A | SEG:seg | : |
Description
BnaC01g42410DBnaC01g42410D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J5B7]
Coordinates
chrLK033760:-:10432..11473
Molecular Weight (calculated)
19214.2 Da
IEP (calculated)
9.905
GRAVY (calculated)
-0.018
Length
175 amino acids
Sequence
(BLAST)
(BLAST)
001: MSASRFVKCV TVGDGAVGKT CLLISYTSNT FPTDYVPTVF DNFSANVVVN GATVNLGLWD TAGQEDYNRL RPLSYRGADV FILAFSLISK ASYENVSKKW
101: IPELKHYAPG VPIILVGSKL DLRDDKQFFI DHPGAHLFTS NANVKAVFDA AIRVVLQPPK QKKKKSKAQK ACSIL
101: IPELKHYAPG VPIILVGSKL DLRDDKQFFI DHPGAHLFTS NANVKAVFDA AIRVVLQPPK QKKKKSKAQK ACSIL
001: MSASRFIKCV TVGDGAVGKT CLLISYTSNT FPTDYVPTVF DNFSANVVVN GATVNLGLWD TAGQEDYNRL RPLSYRGADV FILAFSLISK ASYENVSKKW
101: IPELKHYAPG VPIVLVGTKL DLRDDKQFFI DHPGAVPITT AQGEELKKLI GAPAYIECSS KTQENVKGVF DAAIRVVLQP PKQKKKKSKA QKACSIL
101: IPELKHYAPG VPIVLVGTKL DLRDDKQFFI DHPGAVPITT AQGEELKKLI GAPAYIECSS KTQENVKGVF DAAIRVVLQP PKQKKKKSKA QKACSIL
Arabidopsis Description
ARAC1ROP3 [Source:UniProtKB/TrEMBL;Acc:A0A178VRA4]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.