CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
vacuole 2
extracellular 1
endoplasmic reticulum 1
plasma membrane 2
golgi 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	peroxisome, plasma membrane, plastid, vacuole
BaCelLo:	plastid
ChloroP:	plastid
MultiLoc:	vacuole
Predotar:	plastid
PProwler:	secretory
TargetP:	plastid
WoLF PSORT:	plasma membrane
YLoc:	peroxisome

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX73732
CDX77994
CDX79135
CDX82921
CDX85593
CDX90652
CDX91044
CDY29012
CDY33284
CDY35373
CDY55714
CDY59407
CDY59617

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G32650.1	CDY35373	AT2G26650.1	12678562
AT4G32650.1	CDY55714	AT2G26650.1	12678562
AT4G32650.1	CDY35373	AT2G26650.1	15299147
AT4G32650.1	CDY55714	AT2G26650.1	15299147
AT4G32650.1	CDX73732	AT3G51300.1	15299147
AT4G32650.1	CDX77994	AT3G51300.1	15299147
AT4G32650.1	CDX90652	AT3G51300.1	15299147
AT4G32650.1	CDY29012	AT3G51300.1	15299147
AT4G32650.1	CDY33284	AT3G51300.1	15299147
AT4G32650.1	CDY59407	AT3G51300.1	15299147
AT4G32650.1	CDY59617	AT3G51300.1	15299147
AT4G32650.1	CDX79135	AT4G22200.1	12678562
AT4G32650.1	CDX82921	AT4G22200.1	12678562
AT4G32650.1	CDX85593	AT5G14570.1	15299147
AT4G32650.1	CDX91044	AT5G14570.1	15299147

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY13496	Canola	plastid	94.11	92.53
CDX75267	Canola	plastid	83.57	82.8
CDX68872	Canola	plastid	83.26	82.49
AT4G32650.1	Thale cress	plastid	81.09	79.0
HORVU3Hr1G068040.1	Barley	plasma membrane	33.64	50.7
GSMUA_Achr1P05260_001	Banana	plasma membrane	48.84	49.76
GSMUA_Achr5P09770_001	Banana	plasma membrane	49.77	49.16
Os01t0718700-00	Rice	endoplasmic reticulum, plasma membrane	28.06	48.53
Os06t0254200-00	Rice	plasma membrane, plastid	42.17	44.59
TraesCS3D01G246300.1	Wheat	plastid	40.93	44.37
TraesCS3A01G245200.1	Wheat	mitochondrion	40.93	43.93
Os04t0117500-00	Rice	plasma membrane	19.38	43.71
OQU87429	Sorghum	mitochondrion	39.84	41.12
Zm00001d011723_P002	Maize	cytosol, plasma membrane, plastid	40.47	40.78
Zm00001d011729_P002	Maize	cytosol	39.22	39.97
Zm00001d016987_P001	Maize	plasma membrane	35.5	38.88
TraesCS3B01G274500.1	Wheat	plastid	38.91	38.79
EES07044	Sorghum	cytosol, mitochondrion, peroxisome, plasma membrane	35.19	37.77
CDY03233	Canola	plasma membrane	38.29	37.65
CDY35154	Canola	plasma membrane	38.14	37.44
CDY33464	Canola	cytosol, plasma membrane, plastid	37.05	35.89
CDX78839	Canola	plasma membrane	37.98	35.82
CDX99479	Canola	plasma membrane	37.67	35.47
CDY62359	Canola	cytosol, plasma membrane, plastid	36.43	35.29
CDX76529	Canola	plasma membrane	35.19	31.88
CDX79135	Canola	plasma membrane	36.43	29.82
CDY35373	Canola	cytosol, plasma membrane, vacuole	38.14	28.6
CDY55714	Canola	cytosol, plasma membrane, vacuole	38.14	28.57
CDY34066	Canola	endoplasmic reticulum, plasma membrane	26.36	28.1
CDX68851	Canola	plasma membrane	36.9	27.77
CDX75249	Canola	plasma membrane	37.36	27.51
CDX82921	Canola	cytosol	36.59	27.38
CDY11516	Canola	cytosol	36.59	26.91
CDX76746	Canola	cytosol	36.59	26.85
CDX71184	Canola	plasma membrane	26.2	23.02
CDY51528	Canola	cytosol	28.99	22.56
CDY32059	Canola	plasma membrane	28.53	22.49
CDX74231	Canola	plasma membrane	28.84	22.44
CDY28715	Canola	cytosol	28.84	22.41
CDX92017	Canola	plasma membrane	28.68	22.32
CDY61287	Canola	plasma membrane	15.97	19.43
CDY10020	Canola	cytosol	6.36	12.02

Protein Annotations

Gene3D:1.10.287.630	Gene3D:1.10.287.70	Gene3D:2.60.120.10	MapMan:24.3.2.2	GO:A0A078C5R0	EnsemblPlants:CDX72366
ProteinID:CDX72366	ProteinID:CDX72366.1	ncoils:Coil	GO:GO:0003674	GO:GO:0005215	GO:GO:0005216
GO:GO:0005249	GO:GO:0005575	GO:GO:0006810	GO:GO:0006811	GO:GO:0006813	GO:GO:0008150
GO:GO:0016020	GO:GO:0055085	EnsemblPlantsGene:GSBRNA2T00099859001	InterPro:IPR000595	InterPro:IPR014710	InterPro:IPR021789
InterPro:Ion_trans_dom	InterPro:KHA_dom	InterPro:K_chnl_volt-dep_EAG/ELK/ERG	PFAM:PF00027	PFAM:PF00520	PFAM:PF11834
PRINTS:PR01463	PFscan:PS50042	PFscan:PS51490	PANTHER:PTHR10217	PANTHER:PTHR10217:SF537	InterPro:RmlC-like_jellyroll
SMART:SM00100	SUPFAM:SSF51206	SUPFAM:SSF81324	TMHMM:TMhelix	UniParc:UPI0004EE74B0	InterPro:cNMP-bd-like
InterPro:cNMP-bd_dom	SEG:seg	:	:	:	:

Description

BnaC07g43880D

Coordinates

chrLK031796:-:867954..871472

Molecular Weight (calculated)

74070.1 Da

IEP (calculated)

7.465

GRAVY (calculated)

0.009

Length

645 amino acids

Sequence
(BLAST)

001: MSMTTSEARS PVPLLLRRGR SSTALGTSEE RSPLSLLFRR RSSKDVGNIT SVSSSLLPAF GTVIENDNNP SSKSFIVLPY DRRYRLWELL LVILVGYSAW
101: ASLFELAFEK AADGAIPTID LVVDFFFAVD IVLTFFVAYL DTSTYLIVDD HKLIARRYLK SVAFVMDVLQ IKYFIYIYIY IYIYIYIYIC ESCISLSRYR
201: LEKDTLFNYF VVRVIKLLCV SIFWVHTAGC ILFWIAYHYP RPVDTWIGSQ VEDFKERSIW LGYTYSMYWS IVTLTTVGYG DLHAVNTREK TFNMFYMLFN
301: IGLAAYIIGN MTNLVVHSAL RTFTMRSAIN HILRYTNKNK LPDMMREQML AHVQLKFKTA ELKQEEVLQD LPKAIRSSIN EHLFRSVIEN AYLFKGFPDG
401: LIIQLVSHIK AEYFPPKMEI ILQNEIPTDF YIIVSGGVEI IRSKGASEQV LAKLGPGDMV GEIGVVFNIP QPFTVRTRRL SQVIRISHHK FKEMVQSDAD
501: DAKMIITNFM AYLKELNDEL KKEIPFLRDL LANADAQEMV QTGESQQSYN EEMVTFSKDE NENKQEPKRE GVPKRVIIHG HPPNQGNNKN GDSSGRLIIL
601: PDSLPLLFDL AEKKLGKRGS TIVMVDGAHV EQLDVLREND HLYIF

Best Arabidopsis Sequence Match ( AT4G32650.1 )
(BLAST)

001: MSTTTTEARS PLPLLLRRGR SSTALSASTA EARSPLSILQ FRRRSSKDVR NITSVSSSLL PAFGTFIEDD NPSSKPFIVL HFDRRYRLWE LFLVILVGYS
101: AWASLFELAF EKAAEGALLT IDLVVDFFFA VDIILTFFVS YLDNTTYLNV TDHKLIAKRY LKSVAFVMDV ASTLPIQFIY KTITGDVGRG QAFGFLNLLR
201: LWRLRRVAEL FKRLEKDAHF NYFVIRVIKL LCVTIFWIHL AGCILYWIAY HYPRPTDTWI GSQVEDFKER SVWLGYTYSM YWSIVTLTTV GYGDLHAVNS
301: REKTFNMFYM LFNIGLTSYI IGIMTNLVVH GALRTFAMRS AINDILRYTS KNRLPDTMRE QMLAHMQLKF KTAELRQEEV LQDLPKAIRS SINQHLFRSI
401: IEEAYLFKGF PEGLLVQLVS QIQAEYFPPK MEIILQNEIP TDFYVIVSGG VDIIASKGVS EQVLAKLGPG SMAGEIGVVF NIPQPFTVRT RRLSQVIRIG
501: HHKFKEMVQS DNDVDAKMII ANFMTYLKGL NDELKKEIPF LRDLLDDADA QVQETVQSEE TPQSNDEEIV TVSRHENGQI EERRREGVPK RVIIHGQAPP
601: NQDNKNNGDS NGRLIILPDS IQLLFDLAEK KLGKRGSTIA MADGAHVEQI DALRENDHLY IF

Arabidopsis Description

KAT3KC1 [Source:UniProtKB/TrEMBL;Acc:A0A178UVX9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.