CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
plasma membrane 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
golgi 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, nucleus, plasma membrane
BaCelLo:	nucleus
MultiLoc:	plasma membrane
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX68872
CDX72366
CDX75267
CDX79135
CDX82921
CDY01017
CDY03233
CDY08530
CDY13496
CDY33464
CDY35154
CDY35373
CDY55714
CDY62359
CDY67227
CDY67257

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G22200.1	CDY35373	AT2G26650.1	12678562
AT4G22200.1	CDY55714	AT2G26650.1	12678562
AT4G22200.1	CDY35373	AT2G26650.1	15299147
AT4G22200.1	CDY55714	AT2G26650.1	15299147
AT4G22200.1	CDY01017	AT3G11410.1	11181729
AT4G22200.1	CDY08530	AT3G11410.1	11181729
AT4G22200.1	CDY67227	AT3G11410.1	11181729
AT4G22200.1	CDY67257	AT3G11410.1	11181729
AT4G22200.1	CDY01017	AT3G11410.1	12034902
AT4G22200.1	CDY08530	AT3G11410.1	12034902
AT4G22200.1	CDY67227	AT3G11410.1	12034902
AT4G22200.1	CDY67257	AT3G11410.1	12034902
AT4G22200.1	CDX79135	AT4G22200.1	12678562
AT4G22200.1	CDX82921	AT4G22200.1	12678562
AT4G22200.1	CDX79135	AT4G22200.1	15299147
AT4G22200.1	CDX82921	AT4G22200.1	15299147
AT4G22200.1	CDX79135	AT4G22200.1	17085433
AT4G22200.1	CDX82921	AT4G22200.1	17085433
AT4G22200.1	CDX68872	AT4G32650.1	12678562
AT4G22200.1	CDX72366	AT4G32650.1	12678562
AT4G22200.1	CDX75267	AT4G32650.1	12678562
AT4G22200.1	CDY13496	AT4G32650.1	12678562
AT4G22200.1	CDY03233	AT5G46240.1	12034902
AT4G22200.1	CDY33464	AT5G46240.1	12034902
AT4G22200.1	CDY35154	AT5G46240.1	12034902
AT4G22200.1	CDY62359	AT5G46240.1	12034902
AT4G22200.1	CDY03233	AT5G46240.1	15299147
AT4G22200.1	CDY33464	AT5G46240.1	15299147
AT4G22200.1	CDY35154	AT5G46240.1	15299147
AT4G22200.1	CDY62359	AT5G46240.1	15299147
AT4G22200.1	CDY03233	AT5G46240.1	17085433
AT4G22200.1	CDY33464	AT5G46240.1	17085433
AT4G22200.1	CDY35154	AT5G46240.1	17085433
AT4G22200.1	CDY62359	AT5G46240.1	17085433

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra013599.1-P	Field mustard	cytosol	99.75	91.18
CDX82921	Canola	cytosol	97.46	89.1
AT4G22200.1	Thale cress	cytosol, plastid, vacuole	88.58	87.03
VIT_12s0034g02240.t01	Wine grape	cytosol, mitochondrion, plasma membrane	69.8	65.55
KRH26375	Soybean	cytosol	68.15	64.62
KRH44060	Soybean	cytosol	67.26	63.55
PGSC0003DMT400061090	Potato	cytosol	63.83	61.04
PGSC0003DMT400062100	Potato	plasma membrane	64.85	60.69
Solyc01g104030.2.1	Tomato	cytosol	64.34	60.57
Solyc10g024360.1.1	Tomato	cytosol	63.96	59.93
GSMUA_Achr6P24240_001	Banana	cytosol	60.79	59.88
KXG22062	Sorghum	plastid	11.55	57.23
GSMUA_Achr6P07280_001	Banana	cytosol, mitochondrion, plasma membrane, plastid	59.14	56.55
Zm00001d010209_P001	Maize	plastid	10.03	56.43
KXG22060	Sorghum	cytosol, endoplasmic reticulum, plasma membrane	48.1	54.53
EES19575	Sorghum	plastid	57.61	54.24
TraesCS1D01G267800.1	Wheat	plastid	59.52	54.22
TraesCS1B01G278600.1	Wheat	plasma membrane, plastid	59.26	53.99
TraesCS6B01G081300.1	Wheat	plastid	56.73	53.47
TraesCS1A01G267900.1	Wheat	plastid	58.63	53.23
KXG22064	Sorghum	plastid	56.47	52.85
Zm00001d010210_P001	Maize	cytosol, endoplasmic reticulum, plasma membrane	46.83	52.79
HORVU1Hr1G065250.2	Barley	plastid	59.01	52.36
Os05t0428700-01	Rice	cytosol, plastid	37.18	51.77
Zm00001d038252_P001	Maize	plastid	57.61	48.61
CDY03233	Canola	plasma membrane	35.91	43.14
CDY35154	Canola	plasma membrane	35.66	42.77
CDX78839	Canola	plasma membrane	36.68	42.25
CDY33464	Canola	cytosol, plasma membrane, plastid	35.41	41.89
CDX99479	Canola	plasma membrane	36.29	41.75
CDY62359	Canola	cytosol, plasma membrane, plastid	35.15	41.59
CDX68851	Canola	plasma membrane	42.51	39.09
CDX68872	Canola	plastid	31.98	38.71
CDX75267	Canola	plastid	31.98	38.71
CDY13496	Canola	plastid	31.98	38.41
CDY35373	Canola	cytosol, plasma membrane, vacuole	41.75	38.26
CDY55714	Canola	cytosol, plasma membrane, vacuole	41.62	38.1
CDX75249	Canola	plasma membrane	42.13	37.9
CDX76746	Canola	cytosol	41.75	37.43
CDY11516	Canola	cytosol	41.5	37.29
CDX76529	Canola	plasma membrane	33.5	37.08
CDX72366	Canola	plastid	29.82	36.43
CDY34066	Canola	endoplasmic reticulum, plasma membrane	25.51	33.22
CDY51528	Canola	cytosol	31.22	29.67
CDY28715	Canola	cytosol	31.22	29.64
CDX92017	Canola	plasma membrane	30.58	29.07
CDX74231	Canola	plasma membrane	30.58	29.07
CDX71184	Canola	plasma membrane	27.03	29.02
CDY32059	Canola	plasma membrane	28.93	27.87
CDY10020	Canola	cytosol	10.41	24.05
CDY61287	Canola	plasma membrane	15.23	22.64

Protein Annotations

Gene3D:1.10.287.70	Gene3D:1.25.40.20	Gene3D:2.60.120.10	MapMan:24.3.2.2	GO:A0A078CQM6	InterPro:Ankyrin_rpt
InterPro:Ankyrin_rpt-contain_dom	InterPro:Ankyrin_rpt-contain_sf	EnsemblPlants:CDX79135	ProteinID:CDX79135	ProteinID:CDX79135.1	GO:GO:0003674
GO:GO:0005215	GO:GO:0005216	GO:GO:0005249	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0006810	GO:GO:0006811	GO:GO:0006813	GO:GO:0008150	GO:GO:0016020	GO:GO:0055085
EnsemblPlantsGene:GSBRNA2T00131686001	InterPro:IPR000595	InterPro:IPR002110	InterPro:IPR014710	InterPro:IPR020683	InterPro:IPR021789
InterPro:IPR036770	InterPro:Ion_trans_dom	InterPro:KHA_dom	InterPro:K_chnl_volt-dep_EAG/ELK/ERG	PFAM:PF00027	PFAM:PF00520
PFAM:PF11834	PFAM:PF12796	PRINTS:PR01415	PRINTS:PR01463	PFscan:PS50042	PFscan:PS50088
PFscan:PS50297	PFscan:PS51490	PANTHER:PTHR10217	PANTHER:PTHR10217:SF493	InterPro:RmlC-like_jellyroll	SMART:SM00100
SMART:SM00248	SUPFAM:SSF48403	SUPFAM:SSF51206	SUPFAM:SSF81324	TMHMM:TMhelix	UniParc:UPI0004EE016D
InterPro:cNMP-bd-like	InterPro:cNMP-bd_dom	SEG:seg	:	:	:

Description

BnaA01g12020D

Coordinates

chrLK031816:-:1977626..1981483

Molecular Weight (calculated)

89518.7 Da

IEP (calculated)

6.812

GRAVY (calculated)

-0.034

Length

788 amino acids

Sequence
(BLAST)

001: MDLKYSASHC NLSQDVMKHH RGKERDEEYD ASSLSLNNLS KLILPPLGVA SYNQNQIISN GWVISPMDSR YRWWESFMVL LVAYSAWVYP FEVAFLNSSP
101: KRNLCIADNI VDMFFAVDIV LTFFVAYIDR RTQLLVREPK QIAVRYLSTW FLMDVASTIP FDAIGYLVTG TGKLNLTCNI LGLLRFWRLR RVKHLFTRLE
201: KDIRFSYFCI RCIRLLCVTL FLVHCAGCIY YLLADRYPHG KTWIDAIPSI RDKSLSIKYI AAIYWSITTM TTVGYGDLHA SNTTEMVFIT VYMLFNLGLT
301: AYLIGNMTNL VVEGTRRTME FRNSIQAASN FVNRNRLPPR LKDQILAYMC LRFKAESLNQ QHVIDQLPKS IHKSICQHLF LPSVEKVYLF KGVSREILLL
401: LVSKMKAEYI PPREDVIMQN EAPDDVYIIV SGEVEIIDSE MERDSVLGTL RCGDIFGEVG ALCCRPQSYT FQTKSLSQLL RLKTSFLIET MQIKQQDNAV
501: MLKNFLQHHK KLSDLDVGDL KAQQNGEDDD GSPNIASNLI TVVSTGNAAL LDEILKAKLS PDITDSKGKT PLHIAASKGY EDCVLVLLKH GCNIHIRDVS
601: GNTALWEAIS KKHHSIFRIL YHFAAISDPH VAGDLLCEAV RQNNVEVIKD LLNQGINVDT KDHHGFTALK VALSENQMDM VNLLNTNGAD MVTNELTSLE
701: KLSVVEKEKE RVSIFRGHPL ERKERSSYEA GMLILLPPSL DDLKKIAEEK LGFDGSEMMV TNEDGAEIDS IEVIRDNDKL YFVEKIII

Best Arabidopsis Sequence Match ( AT4G22200.1 )
(BLAST)

001: MDLKYSASHC NLSSDMKLRR FHQHRGKGRE EEYDASSLSL NNLSKLILPP LGVASYNQNH IRSSGWIISP MDSRYRCWEF YMVLLVAYSA WVYPFEVAFL
101: NSSPKRNLCI ADNIVDLFFA VDIVLTFFVA YIDERTQLLV REPKQIAVRY LSTWFLMDVA STIPFDAIGY LITGTSTLNI TCNLLGLLRF WRLRRVKHLF
201: TRLEKDIRYS YFWIRCFRLL SVTLFLVHCA GCSYYLIADR YPHQGKTWTD AIPNFTETSL SIRYIAAIYW SITTMTTVGY GDLHASNTIE MVFITVYMLF
301: NLGLTAYLIG NMTNLVVEGT RRTMEFRNSI EAASNFVNRN RLPPRLKDQI LAYMCLRFKA ESLNQQHLID QLPKSIYKSI CQHLFLPSVE KVYLFKGVSR
401: EILLLLVSKM KAEYIPPRED VIMQNEAPDD VYIIVSGEVE IIDSEMERES VLGTLRCGDI FGEVGALCCR PQSYTFQTKS LSQLLRLKTS FLIETMQIKQ
501: QDNATMLKNF LQHHKKLSNL DIGDLKAQQN GENTDVVPPN IASNLIAVVT TGNAALLDEL LKAKLSPDIT DSKGKTPLHV AASRGYEDCV LVLLKHGCNI
601: HIRDVNGNSA LWEAIISKHY EIFRILYHFA AISDPHIAGD LLCEAAKQNN VEVMKALLKQ GLNVDTEDHH GVTALQVAMA EDQMDMVNLL ATNGADVVCV
701: NTHNEFTPLE KLRVVEEEEE EERGRVSIYR GHPLERRERS CNEAGKLILL PPSLDDLKKI AGEKFGFDGS ETMVTNEDGA EIDSIEVIRD NDKLYFVVNK
801: II

Arabidopsis Description

AKT2Potassium channel AKT2/3 [Source:UniProtKB/Swiss-Prot;Acc:Q38898]
SUBAcon: [plastid,vacuole,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.