CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX68872
CDX72366
CDX75267
CDX79135
CDX82921
CDY01017
CDY03233
CDY08530
CDY13496
CDY33464
CDY35154
CDY35373
CDY55714
CDY62359
CDY67227
CDY67257

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G22200.1	CDY35373	AT2G26650.1	12678562
AT4G22200.1	CDY55714	AT2G26650.1	12678562
AT4G22200.1	CDY35373	AT2G26650.1	15299147
AT4G22200.1	CDY55714	AT2G26650.1	15299147
AT4G22200.1	CDY01017	AT3G11410.1	11181729
AT4G22200.1	CDY08530	AT3G11410.1	11181729
AT4G22200.1	CDY67227	AT3G11410.1	11181729
AT4G22200.1	CDY67257	AT3G11410.1	11181729
AT4G22200.1	CDY01017	AT3G11410.1	12034902
AT4G22200.1	CDY08530	AT3G11410.1	12034902
AT4G22200.1	CDY67227	AT3G11410.1	12034902
AT4G22200.1	CDY67257	AT3G11410.1	12034902
AT4G22200.1	CDX79135	AT4G22200.1	12678562
AT4G22200.1	CDX82921	AT4G22200.1	12678562
AT4G22200.1	CDX79135	AT4G22200.1	15299147
AT4G22200.1	CDX82921	AT4G22200.1	15299147
AT4G22200.1	CDX79135	AT4G22200.1	17085433
AT4G22200.1	CDX82921	AT4G22200.1	17085433
AT4G22200.1	CDX68872	AT4G32650.1	12678562
AT4G22200.1	CDX72366	AT4G32650.1	12678562
AT4G22200.1	CDX75267	AT4G32650.1	12678562
AT4G22200.1	CDY13496	AT4G32650.1	12678562
AT4G22200.1	CDY03233	AT5G46240.1	12034902
AT4G22200.1	CDY33464	AT5G46240.1	12034902
AT4G22200.1	CDY35154	AT5G46240.1	12034902
AT4G22200.1	CDY62359	AT5G46240.1	12034902
AT4G22200.1	CDY03233	AT5G46240.1	15299147
AT4G22200.1	CDY33464	AT5G46240.1	15299147
AT4G22200.1	CDY35154	AT5G46240.1	15299147
AT4G22200.1	CDY62359	AT5G46240.1	15299147
AT4G22200.1	CDY03233	AT5G46240.1	17085433
AT4G22200.1	CDY33464	AT5G46240.1	17085433
AT4G22200.1	CDY35154	AT5G46240.1	17085433
AT4G22200.1	CDY62359	AT5G46240.1	17085433

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra013599.1-P	Field mustard	cytosol	97.68	97.68
CDX79135	Canola	plasma membrane	89.1	97.46
AT4G22200.1	Thale cress	cytosol, plastid, vacuole	79.93	85.91
VIT_12s0034g02240.t01	Wine grape	cytosol, mitochondrion, plasma membrane	63.23	64.96
KRH26375	Soybean	cytosol	62.18	64.5
KRH44060	Soybean	cytosol	61.25	63.31
PGSC0003DMT400061090	Potato	cytosol	57.89	60.56
PGSC0003DMT400062100	Potato	plasma membrane	59.05	60.45
Solyc01g104030.2.1	Tomato	cytosol	58.24	59.98
Solyc10g024360.1.1	Tomato	cytosol	58.12	59.57
GSMUA_Achr6P24240_001	Banana	cytosol	54.87	59.12
KXG22062	Sorghum	plastid	10.56	57.23
Zm00001d010209_P001	Maize	plastid	9.16	56.43
GSMUA_Achr6P07280_001	Banana	cytosol, mitochondrion, plasma membrane, plastid	53.6	56.07
KXG22060	Sorghum	cytosol, endoplasmic reticulum, plasma membrane	43.85	54.39
EES19575	Sorghum	plastid	52.67	54.24
TraesCS1D01G267800.1	Wheat	plastid	54.06	53.87
TraesCS1B01G278600.1	Wheat	plasma membrane, plastid	53.83	53.64
TraesCS6B01G081300.1	Wheat	plastid	51.74	53.35
TraesCS1A01G267900.1	Wheat	plastid	53.25	52.88
KXG22064	Sorghum	plastid	51.62	52.85
Zm00001d010210_P001	Maize	cytosol, endoplasmic reticulum, plasma membrane	42.58	52.5
HORVU1Hr1G065250.2	Barley	plastid	53.6	52.03
Os05t0428700-01	Rice	cytosol, plastid	33.76	51.41
Zm00001d038252_P001	Maize	plastid	52.32	48.29
CDY03233	Canola	plasma membrane	32.6	42.84
CDY35154	Canola	plasma membrane	32.37	42.47
CDX78839	Canola	plasma membrane	33.18	41.81
CDX99479	Canola	plasma membrane	32.83	41.31
CDY33464	Canola	cytosol, plasma membrane, plastid	31.9	41.29
CDY62359	Canola	cytosol, plasma membrane, plastid	31.67	40.99
CDX68851	Canola	plasma membrane	38.75	38.97
CDY13496	Canola	plastid	29.23	38.41
CDX68872	Canola	plastid	29.0	38.4
CDX75267	Canola	plastid	29.0	38.4
CDX75249	Canola	plasma membrane	38.4	37.79
CDY35373	Canola	cytosol, plasma membrane, vacuole	37.47	37.56
CDY55714	Canola	cytosol, plasma membrane, vacuole	37.35	37.4
CDX76746	Canola	cytosol	37.82	37.09
CDY11516	Canola	cytosol	37.59	36.94
CDX76529	Canola	plasma membrane	30.39	36.8
CDX72366	Canola	plastid	27.38	36.59
CDY34066	Canola	endoplasmic reticulum, plasma membrane	23.32	33.22
CDY51528	Canola	cytosol	28.54	29.67
CDY28715	Canola	cytosol	28.54	29.64
CDX92017	Canola	plasma membrane	27.96	29.07
CDX74231	Canola	plasma membrane	27.96	29.07
CDX71184	Canola	plasma membrane	24.59	28.88
CDY32059	Canola	plasma membrane	26.33	27.75
CDY10020	Canola	cytosol	9.51	24.05
CDY61287	Canola	plasma membrane	13.92	22.64

Protein Annotations

Gene3D:1.10.287.70	Gene3D:1.25.40.20	Gene3D:2.60.120.10	MapMan:24.3.2.2	GO:A0A078D0K3	InterPro:Ankyrin_rpt
InterPro:Ankyrin_rpt-contain_dom	InterPro:Ankyrin_rpt-contain_sf	EnsemblPlants:CDX82921	ProteinID:CDX82921	ProteinID:CDX82921.1	ncoils:Coil
GO:GO:0003674	GO:GO:0005215	GO:GO:0005216	GO:GO:0005249	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0006810	GO:GO:0006811	GO:GO:0006813	GO:GO:0008150	GO:GO:0016020
GO:GO:0055085	EnsemblPlantsGene:GSBRNA2T00138306001	InterPro:IPR000595	InterPro:IPR002110	InterPro:IPR014710	InterPro:IPR020683
InterPro:IPR021789	InterPro:IPR036770	InterPro:Ion_trans_dom	InterPro:KHA_dom	InterPro:K_chnl_volt-dep_EAG/ELK/ERG	PFAM:PF00027
PFAM:PF00520	PFAM:PF11834	PFAM:PF12796	PRINTS:PR01415	PRINTS:PR01463	PFscan:PS50042
PFscan:PS50088	PFscan:PS50297	PFscan:PS51490	PANTHER:PTHR10217	PANTHER:PTHR10217:SF493	InterPro:RmlC-like_jellyroll
SMART:SM00100	SMART:SM00248	SUPFAM:SSF48403	SUPFAM:SSF51206	SUPFAM:SSF81324	TMHMM:TMhelix
UniParc:UPI0004EDF4C0	InterPro:cNMP-bd-like	InterPro:cNMP-bd_dom	SEG:seg	:	:

Description

BnaC01g13710D

Coordinates

chrLK031830:-:1346490..1351968

Molecular Weight (calculated)

97959.4 Da

IEP (calculated)

6.981

GRAVY (calculated)

-0.021

Length

862 amino acids

Sequence
(BLAST)

001: MNKKENEVVF TGKIVEVSER SIKKVTVDKS GASEDIAFIC LDIILEKVSP ESLELCLERR IRDTFIPFLP RVNIMDLKYS ASHCNLSPDV MKHHRGKERD
101: EEYGASSLSL NNLSKLILPP LGVASYNQNQ IISSGWVISP MDSRYRWWES FMVLLVAYSA WVYPFEVAFL NSSPKRNLCI ADNIVDMFFA VDIVLTFFVA
201: YIDRRTQLLV REPKQIAIRY LSTWFLMDVA STIPFDAIGY LVTGTGKLNL TCNILGLLRF WRLRRVKHLF TRLEKDIRFS YLCIRCIRLL CVTLFLVHCA
301: GCIYYLLADR YPHGKTWIDS IPSIRDKSLS IKYIAAIYWS ITTMTTVGYG DLHASNTTEM VFITVYMLFN LGLTAYLIGN MTNLVVEGTR RTMEFRNSIQ
401: AASNFVNRNR LPPRLKEQIL AYMCLRFKAE SLNQQHVIDQ LPKSIHKSIC QHLFLPSVEK VYLFKGVSRE ILLLLVSKMK AEYIPPREDV IMQNEAPDDV
501: YIIVSGEVEI IDSEMERDSV LGTLRCGDIF GEVGALCCRP QSYTFQTKSL SQLLRLKTSF LIETMQIKQQ DNAVMLKNFL QHHKKLSDLD VGDLSAQQDG
601: EKDEGSPNIA SNLITVVSTG NAALLDEILK AKLSPDITDS KGKTPLHIAA SKGYEDCVLV LLKHGCNIHI RDVTGNTALW EAISKKHHSI FRILYHFAAI
701: SDPHVAGDLL CEAVRQNNVE VIEDLLKQGI NVDTKDHHGF TALKVAMSQN QMDLVNLLNM NGADMVTNEL TSLEKLRVVE KEKERVSIFR GHPLERKERS
801: SYEAGMLILL PPSLDDLKKI AEEKLGFNGS EMMVTNEDGA EIDSIEVIRD NDKLYFVEKI II

Best Arabidopsis Sequence Match ( AT4G22200.1 )
(BLAST)

001: MDLKYSASHC NLSSDMKLRR FHQHRGKGRE EEYDASSLSL NNLSKLILPP LGVASYNQNH IRSSGWIISP MDSRYRCWEF YMVLLVAYSA WVYPFEVAFL
101: NSSPKRNLCI ADNIVDLFFA VDIVLTFFVA YIDERTQLLV REPKQIAVRY LSTWFLMDVA STIPFDAIGY LITGTSTLNI TCNLLGLLRF WRLRRVKHLF
201: TRLEKDIRYS YFWIRCFRLL SVTLFLVHCA GCSYYLIADR YPHQGKTWTD AIPNFTETSL SIRYIAAIYW SITTMTTVGY GDLHASNTIE MVFITVYMLF
301: NLGLTAYLIG NMTNLVVEGT RRTMEFRNSI EAASNFVNRN RLPPRLKDQI LAYMCLRFKA ESLNQQHLID QLPKSIYKSI CQHLFLPSVE KVYLFKGVSR
401: EILLLLVSKM KAEYIPPRED VIMQNEAPDD VYIIVSGEVE IIDSEMERES VLGTLRCGDI FGEVGALCCR PQSYTFQTKS LSQLLRLKTS FLIETMQIKQ
501: QDNATMLKNF LQHHKKLSNL DIGDLKAQQN GENTDVVPPN IASNLIAVVT TGNAALLDEL LKAKLSPDIT DSKGKTPLHV AASRGYEDCV LVLLKHGCNI
601: HIRDVNGNSA LWEAIISKHY EIFRILYHFA AISDPHIAGD LLCEAAKQNN VEVMKALLKQ GLNVDTEDHH GVTALQVAMA EDQMDMVNLL ATNGADVVCV
701: NTHNEFTPLE KLRVVEEEEE EERGRVSIYR GHPLERRERS CNEAGKLILL PPSLDDLKKI AGEKFGFDGS ETMVTNEDGA EIDSIEVIRD NDKLYFVVNK
801: II

Arabidopsis Description

AKT2Potassium channel AKT2/3 [Source:UniProtKB/Swiss-Prot;Acc:Q38898]
SUBAcon: [plastid,vacuole,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.