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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane

Predictor Summary:
  • nucleus 1
  • plasma membrane 3
  • extracellular 1
  • golgi 1
  • endoplasmic reticulum 1
  • vacuole 1
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane
Any Predictor:cytosol, nucleus, plasma membrane
BaCelLo:nucleus
MultiLoc:plasma membrane
PProwler:secretory
WoLF PSORT:plasma membrane
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
CDX75141
CDX79135
CDX82921
CDY03233
CDY33464
CDY35154
CDY35373
CDY54350
CDY55714
CDY62359

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT5G46240.1 CDY35373 AT2G26650.1 15299147
AT5G46240.1 CDY55714 AT2G26650.1 15299147
AT5G46240.1 CDX79135 AT4G22200.1 12034902
AT5G46240.1 CDX82921 AT4G22200.1 12034902
AT5G46240.1 CDX79135 AT4G22200.1 15299147
AT5G46240.1 CDX82921 AT4G22200.1 15299147
AT5G46240.1 CDX79135 AT4G22200.1 17085433
AT5G46240.1 CDX82921 AT4G22200.1 17085433
AT5G46240.1 CDX75141 AT5G41160.1 15299147
AT5G46240.1 CDY54350 AT5G41160.1 15299147
AT5G46240.1 CDY03233 AT5G46240.1 11042178
AT5G46240.1 CDY33464 AT5G46240.1 11042178
AT5G46240.1 CDY35154 AT5G46240.1 11042178
AT5G46240.1 CDY62359 AT5G46240.1 11042178
AT5G46240.1 CDY03233 AT5G46240.1 15299147
AT5G46240.1 CDY33464 AT5G46240.1 15299147
AT5G46240.1 CDY35154 AT5G46240.1 15299147
AT5G46240.1 CDY62359 AT5G46240.1 15299147
AT5G46240.1 CDY03233 AT5G46240.1 17085433
AT5G46240.1 CDY33464 AT5G46240.1 17085433
AT5G46240.1 CDY35154 AT5G46240.1 17085433
AT5G46240.1 CDY62359 AT5G46240.1 17085433
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY35154 Canola plasma membrane 96.8 96.65
CDY33464 Canola cytosol, plasma membrane, plastid 85.82 84.53
CDY62359 Canola cytosol, plasma membrane, plastid 85.37 84.08
AT5G46240.1 Thale cress plasma membrane 86.28 83.6
CDX99479 Canola plasma membrane 75.3 72.12
CDX78839 Canola plasma membrane 75.15 72.08
Os01t0756700-01 Rice plasma membrane 48.02 62.75
EES01496 Sorghum mitochondrion, plasma membrane 50.0 61.89
TraesCS3A01G294200.1 Wheat mitochondrion, plasma membrane 46.95 61.6
TraesCS3B01G328800.1 Wheat plasma membrane 47.41 61.58
TraesCS3D01G294000.1 Wheat mitochondrion, plasma membrane 47.1 61.55
CDX76529 Canola plasma membrane 66.16 60.96
Solyc02g070530.2.1 Tomato nucleus 62.35 59.45
KRH44805 Soybean plasma membrane 65.55 59.07
HORVU3Hr1G072850.15 Barley plastid 45.88 58.79
GSMUA_Achr10P... Banana plasma membrane 58.84 58.75
PGSC0003DMT400054339 Potato plasma membrane 61.43 58.58
GSMUA_Achr7P09360_001 Banana plasma membrane 57.32 57.85
CDY34066 Canola endoplasmic reticulum, plasma membrane 52.29 56.69
VIT_10s0003g03270.t01 Wine grape plasma membrane 67.68 56.13
Os01t0210700-02 Rice extracellular 51.07 55.74
Solyc08g016500.2.1 Tomato cytosol, endoplasmic reticulum, mitochondrion, plasma membrane 57.93 55.64
KRH21063 Soybean plasma membrane 65.7 55.47
PGSC0003DMT400024968 Potato cytosol, plasma membrane, vacuole 57.93 55.15
KRH11194 Soybean plasma membrane 64.79 54.7
GSMUA_Achr6P05630_001 Banana cytosol, nucleus, plasma membrane 56.4 54.33
GSMUA_Achr6P26910_001 Banana endoplasmic reticulum, peroxisome, plasma membrane 58.08 52.26
EES06576 Sorghum plasma membrane 57.01 51.3
Os02t0245800-01 Rice plasma membrane 55.79 50.97
GSMUA_Achr8P27260_001 Banana plasma membrane 56.25 50.9
GSMUA_Achr9P06470_001 Banana plasma membrane 55.95 50.83
TraesCS6A01G160500.1 Wheat plasma membrane 55.64 50.28
TraesCS6D01G152200.1 Wheat plasma membrane 55.34 50.0
GSMUA_Achr2P09100_001 Banana plasma membrane, vacuole 56.55 49.87
TraesCS6B01G190900.1 Wheat plasma membrane 55.03 49.79
Zm00001d053446_P001 Maize plastid 56.86 49.21
Zm00001d016160_P001 Maize plasma membrane 51.68 48.71
HORVU3Hr1G028670.16 Barley plasma membrane 52.59 48.66
TraesCS3D01G148600.1 Wheat plasma membrane 52.74 48.12
TraesCS3A01G132400.1 Wheat plasma membrane 52.74 48.12
TraesCS3B01G167100.1 Wheat plasma membrane 52.59 47.98
Solyc03g058900.1.1 Tomato cytosol 13.57 45.64
Zm00001d039386_P001 Maize plasma membrane 44.36 44.91
KRH58233 Soybean cytosol, extracellular, plasma membrane 14.79 43.69
PGSC0003DMT400054318 Potato nucleus 19.97 41.59
CDX68872 Canola plastid 40.4 40.71
CDX75267 Canola plastid 39.94 40.25
CDY13496 Canola plastid 40.24 40.24
CDX72366 Canola plastid 37.65 38.29
CDY35373 Canola cytosol, plasma membrane, vacuole 49.54 37.79
PGSC0003DMT400024866 Potato cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole 16.62 37.72
CDY55714 Canola cytosol, plasma membrane, vacuole 49.24 37.51
CDX68851 Canola plasma membrane 47.56 36.41
CDY11516 Canola cytosol 48.63 36.37
CDX76746 Canola cytosol 48.63 36.29
CDX79135 Canola plasma membrane 43.14 35.91
CDX75249 Canola plasma membrane 47.56 35.62
CDX82921 Canola cytosol 42.84 32.6
Zm00001d012717_P002 Maize plasma membrane 50.91 32.4
CDX92017 Canola plasma membrane 30.18 23.88
CDY51528 Canola cytosol 30.03 23.76
CDX74231 Canola plasma membrane 30.03 23.76
CDY28715 Canola cytosol 30.03 23.73
CDX71184 Canola plasma membrane 26.52 23.71
CDY32059 Canola plasma membrane 29.12 23.35
CDY61287 Canola plasma membrane 16.46 20.38
CDY10020 Canola cytosol 6.71 12.9
Protein Annotations
Gene3D:1.10.287.630Gene3D:1.10.287.70Gene3D:2.60.120.10MapMan:24.3.2.2GO:A0A078EUG7EnsemblPlants:CDY03233
ProteinID:CDY03233ProteinID:CDY03233.1GO:GO:0003674GO:GO:0005215GO:GO:0005216GO:GO:0005249
GO:GO:0005575GO:GO:0006810GO:GO:0006811GO:GO:0006813GO:GO:0008150GO:GO:0016020
GO:GO:0055085EnsemblPlantsGene:GSBRNA2T00115750001InterPro:IPR000595InterPro:IPR014710InterPro:IPR021789InterPro:Ion_trans_dom
InterPro:KHA_domInterPro:K_chnl_volt-dep_EAG/ELK/ERGPFAM:PF00027PFAM:PF00520PFAM:PF11834PRINTS:PR01463
PFscan:PS50042PFscan:PS51490PANTHER:PTHR10217PANTHER:PTHR10217:SF551InterPro:RmlC-like_jellyrollSMART:SM00100
SUPFAM:SSF51206SUPFAM:SSF81324TMHMM:TMhelixUniParc:UPI0004EE951FInterPro:cNMP-bd-likeInterPro:cNMP-bd_dom
SEG:seg:::::
Description
BnaC09g19230D
Coordinates
chrLK031941:+:987712..991450
Molecular Weight (calculated)
75626.9 Da
IEP (calculated)
6.931
GRAVY (calculated)
-0.116
Length
656 amino acids
Sequence
(BLAST)
001: MSISCTKNIF ERFCVEEYNI DTIKQSSFLS ADLLPSLGAR INQSTKLRKH IISPFNPKYR AWEMWLVFLV IYSAWICPFE FAFITYKKDA LFIIDNIVNG
101: LFAIDIVLTF FVAYLDSHSY LLVDNPKKIT IRYLSTWFAF DVCSTAPFQP LSLLFNYNGN ELGFRILSML RLWRLRRVSS LFARLEKDIR FNYFWIRCTK
201: LISVTLFAVH CAGCFNYLIA DRYPNPRKTW IGAVYPDFKE TSLWNRYVTA LYWSITTLTT TGYGDLHPEN PREMIFDIFF MMFNLGLTAY LIGNMTNLVV
301: HWTSRTRSFR DTVRAASEFA SRNQLPHDIQ DQMLSHFCLK FKTEGLKQQE TLNNLPKAIR SSIANYLFFP IVQNIYLFQG VSRDFLFQLV SDIDAEYFPP
401: KEDIILQNEA PTDLYILVSG SVDFTAYVDG QDQIQGKAVV GDMFGEIGVL CYRPQPFTVK TTELSQILRI SRTSLMSAMH VHAEDGRVIM NNLFKKLRGQ
501: QSIAIEDTNN DQQNINFQLM GWEEWMDSRK DANCLDVTES TSDSGEKAIM DATHKGDTET IKKLVKHQHC SSSIQTKPCR GHDKRVTIHM LSQEKDQSQC
601: HNGKLILLPK SIEELVILAG EKFGGCSFTK ITNAENTEID DLDVIRDGDH LFFSSN
Best Arabidopsis Sequence Match ( AT5G46240.1 )
(BLAST)
001: MSISWTRNFF ERFCVEEYNI DTIKQSSFLS ADLLPSLGAR INQSTKLRKH IISPFNPRYR AWEMWLVLLV IYSAWICPFQ FAFITYKKDA IFIIDNIVNG
101: FFAIDIILTF FVAYLDSHSY LLVDSPKKIA IRYLSTWFAF DVCSTAPFQP LSLLFNYNGS ELGFRILSML RLWRLRRVSS LFARLEKDIR FNYFWIRCTK
201: LISVTLFAIH CAGCFNYLIA DRYPNPRKTW IGAVYPNFKE ASLWNRYVTA LYWSITTLTT TGYGDFHAEN PREMLFDIFF MMFNLGLTAY LIGNMTNLVV
301: HWTSRTRTFR DSVRAASEFA SRNQLPHDIQ DQMLSHICLK FKTEGLKQQE TLNNLPKAIR SSIANYLFFP IVHNIYLFQG VSRNFLFQLV SDIDAEYFPP
401: KEDIILQNEA PTDLYILVSG AVDFTVYVDG HDQFQGKAVI GETFGEVGVL YYRPQPFTVR TTELSQILRI SRTSLMSAMH AHADDGRVIM NNLFMKLRGQ
501: QSIAIDDSNT SGHENRDFKS MGWEEWRDSR KDGYGLDVTN PTSDTALMDA IHKEDTEMVK KILKEQKIER AKVERSSSET AGRSYANDSS KKDPYCSSSN
601: QIIKPCKREE KRVTIHMMSE SKNGKLILLP SSIEELLRLA SEKFGGCNFT KITNADNAEI DDLDVIWDGD HLYFSSN
Arabidopsis Description
KAT1At5g46240 [Source:UniProtKB/TrEMBL;Acc:Q67YG3]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.