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Tomato
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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • plastid 2
  • mitochondrion 3
  • cytosol 2
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, mitochondrion, plastid
BaCelLo:plastid
iPSORT:mitochondrion
MultiLoc:cytosol
PProwler:mitochondrion
TargetP:mitochondrion
WoLF PSORT:plastid
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
Solyc01g088550.2.1
Solyc01g104030.2.1
Solyc02g070530.2.1
Solyc03g058900.1.1
Solyc05g017930.1.1
Solyc08g016500.2.1
Solyc10g024360.1.1
Solyc12g006850.1.1

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT5G46240.1 Solyc05g017930.1.1 AT2G26650.1 15299147
AT5G46240.1 Solyc12g006850.1.1 AT2G26650.1 15299147
AT5G46240.1 Solyc01g104030.2.1 AT4G22200.1 12034902
AT5G46240.1 Solyc10g024360.1.1 AT4G22200.1 12034902
AT5G46240.1 Solyc01g104030.2.1 AT4G22200.1 15299147
AT5G46240.1 Solyc10g024360.1.1 AT4G22200.1 15299147
AT5G46240.1 Solyc01g104030.2.1 AT4G22200.1 17085433
AT5G46240.1 Solyc10g024360.1.1 AT4G22200.1 17085433
AT5G46240.1 Solyc01g088550.2.1 AT5G41160.1 15299147
AT5G46240.1 Solyc02g070530.2.1 AT5G46240.1 11042178
AT5G46240.1 Solyc03g058900.1.1 AT5G46240.1 11042178
AT5G46240.1 Solyc08g016500.2.1 AT5G46240.1 11042178
AT5G46240.1 Solyc02g070530.2.1 AT5G46240.1 15299147
AT5G46240.1 Solyc03g058900.1.1 AT5G46240.1 15299147
AT5G46240.1 Solyc08g016500.2.1 AT5G46240.1 15299147
AT5G46240.1 Solyc02g070530.2.1 AT5G46240.1 17085433
AT5G46240.1 Solyc03g058900.1.1 AT5G46240.1 17085433
AT5G46240.1 Solyc08g016500.2.1 AT5G46240.1 17085433
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400054318 Potato nucleus 36.41 22.54
PGSC0003DMT400024866 Potato cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole 33.33 22.49
Solyc02g070530.2.1 Tomato nucleus 63.59 18.02
TraesCS3B01G328800.1 Wheat plasma membrane 39.49 15.25
TraesCS3D01G294000.1 Wheat mitochondrion, plasma membrane 38.97 15.14
Os01t0756700-01 Rice plasma membrane 38.46 14.94
TraesCS3A01G294200.1 Wheat mitochondrion, plasma membrane 37.95 14.8
HORVU3Hr1G072850.15 Barley plastid 38.46 14.65
Solyc08g016500.2.1 Tomato cytosol, endoplasmic reticulum, mitochondrion, plasma membrane 49.23 14.06
EES01496 Sorghum mitochondrion, plasma membrane 36.92 13.58
CDY03233 Canola plasma membrane 45.64 13.57
Bra017567.1-P Field mustard plasma membrane 45.64 13.55
CDY35154 Canola plasma membrane 45.64 13.55
GSMUA_Achr10P... Banana plasma membrane 45.64 13.55
Bra025028.1-P Field mustard cytosol, endoplasmic reticulum, plasma membrane 45.13 13.21
CDY33464 Canola cytosol, plasma membrane, plastid 45.13 13.21
AT5G46240.1 Thale cress plasma membrane 45.64 13.15
CDY62359 Canola cytosol, plasma membrane, plastid 44.62 13.06
Os01t0210700-02 Rice extracellular 40.0 12.98
Bra013296.1-P Field mustard plasma membrane 45.64 12.95
Solyc09g005220.1.1 Tomato cytosol 18.97 12.94
KRH44805 Soybean plasma membrane 48.21 12.91
CDX78839 Canola plasma membrane 45.13 12.87
CDX99479 Canola plasma membrane 45.13 12.85
GSMUA_Achr8P27260_001 Banana plasma membrane 47.18 12.69
CDY34066 Canola endoplasmic reticulum, plasma membrane 38.97 12.56
GSMUA_Achr2P09100_001 Banana plasma membrane, vacuole 47.18 12.37
GSMUA_Achr9P06470_001 Banana plasma membrane 45.64 12.33
GSMUA_Achr7P09360_001 Banana plasma membrane 41.03 12.31
AT4G18290.2 Thale cress mitochondrion, plasma membrane 44.62 12.29
VIT_10s0003g03270.t01 Wine grape plasma membrane 49.74 12.26
Bra021012.1-P Field mustard plasma membrane 44.1 12.08
CDX76529 Canola plasma membrane 44.1 12.08
GSMUA_Achr6P05630_001 Banana cytosol, nucleus, plasma membrane 41.03 11.75
Zm00001d039386_P001 Maize plasma membrane 38.46 11.57
KRH11194 Soybean plasma membrane 45.64 11.45
GSMUA_Achr6P26910_001 Banana endoplasmic reticulum, peroxisome, plasma membrane 42.56 11.39
TraesCS3B01G167100.1 Wheat plasma membrane 41.54 11.27
TraesCS3A01G132400.1 Wheat plasma membrane 41.54 11.27
KRH21063 Soybean plasma membrane 44.62 11.2
HORVU3Hr1G028670.16 Barley plasma membrane 40.51 11.14
Os02t0245800-01 Rice plasma membrane 41.03 11.14
TraesCS3D01G148600.1 Wheat plasma membrane 40.51 10.99
TraesCS6A01G160500.1 Wheat plasma membrane 38.97 10.47
TraesCS6B01G190900.1 Wheat plasma membrane 38.46 10.34
TraesCS6D01G152200.1 Wheat plasma membrane 38.46 10.33
Solyc01g010080.2.1 Tomato plastid 32.82 10.19
EES06576 Sorghum plasma membrane 37.44 10.01
Zm00001d016160_P001 Maize plasma membrane 35.38 9.91
Solyc12g006850.1.1 Tomato plasma membrane 44.62 9.85
Solyc08g068000.1.1 Tomato plasma membrane 32.31 9.8
Zm00001d053446_P001 Maize plastid 37.44 9.63
Solyc08g066990.2.1 Tomato plasma membrane 41.54 9.4
Solyc05g017930.1.1 Tomato nucleus, plasma membrane 6.67 9.09
Solyc10g024360.1.1 Tomato cytosol 32.31 7.49
Zm00001d012717_P002 Maize plasma membrane 39.49 7.47
Solyc01g104030.2.1 Tomato cytosol 31.79 7.41
KRH58233 Soybean cytosol, extracellular, plasma membrane 8.21 7.21
Solyc03g097940.2.1 Tomato plasma membrane 23.08 5.79
Solyc11g011500.1.1 Tomato cytosol 23.59 5.55
Solyc05g051220.2.1 Tomato cytosol 23.08 5.46
Protein Annotations
Gene3D:2.60.120.10MapMan:35.1GO:GO:0003674GO:GO:0005215GO:GO:0005249GO:GO:0005575
GO:GO:0005623GO:GO:0005886GO:GO:0005887GO:GO:0006810GO:GO:0008150GO:GO:0009987
GO:GO:0016020GO:GO:0042391GO:GO:0071805InterPro:IPR000595InterPro:IPR014710UniProt:K4BGT8
PFAM:PF00027PFscan:PS50042PANTHER:PTHR10217PANTHER:PTHR10217:SF551InterPro:RmlC-like_jellyrollSMART:SM00100
SUPFAM:SSF51206EnsemblPlantsGene:Solyc03g058900.1EnsemblPlants:Solyc03g058900.1.1UniParc:UPI0002768CD4InterPro:cNMP-bd-likeInterPro:cNMP-bd_dom
Description
No Description!
Coordinates
chr3:-:26594486..26596107
Molecular Weight (calculated)
21949.7 Da
IEP (calculated)
4.573
GRAVY (calculated)
0.086
Length
195 amino acids
Sequence
(BLAST)
001: MFFENYRLVI SCKVVRQTCP VLSFKYNRDG GLDALTGNSS SAFCIRAVEG KSVYAETKNI RKESVLMEEM EALMFGAEYC CTHNVMCFPN LLFQLVPEME
101: AEYFPPKQDV ILQNEAPTDL YIIVSGAVEF IAQIEGLEQT IGKAVAGEIF GEIGVLCGRP QPFAVRTTEI FQILRLNRTS LMNILRANPE DERLL
Best Arabidopsis Sequence Match ( AT5G46240.1 )
(BLAST)
001: MSISWTRNFF ERFCVEEYNI DTIKQSSFLS ADLLPSLGAR INQSTKLRKH IISPFNPRYR AWEMWLVLLV IYSAWICPFQ FAFITYKKDA IFIIDNIVNG
101: FFAIDIILTF FVAYLDSHSY LLVDSPKKIA IRYLSTWFAF DVCSTAPFQP LSLLFNYNGS ELGFRILSML RLWRLRRVSS LFARLEKDIR FNYFWIRCTK
201: LISVTLFAIH CAGCFNYLIA DRYPNPRKTW IGAVYPNFKE ASLWNRYVTA LYWSITTLTT TGYGDFHAEN PREMLFDIFF MMFNLGLTAY LIGNMTNLVV
301: HWTSRTRTFR DSVRAASEFA SRNQLPHDIQ DQMLSHICLK FKTEGLKQQE TLNNLPKAIR SSIANYLFFP IVHNIYLFQG VSRNFLFQLV SDIDAEYFPP
401: KEDIILQNEA PTDLYILVSG AVDFTVYVDG HDQFQGKAVI GETFGEVGVL YYRPQPFTVR TTELSQILRI SRTSLMSAMH AHADDGRVIM NNLFMKLRGQ
501: QSIAIDDSNT SGHENRDFKS MGWEEWRDSR KDGYGLDVTN PTSDTALMDA IHKEDTEMVK KILKEQKIER AKVERSSSET AGRSYANDSS KKDPYCSSSN
601: QIIKPCKREE KRVTIHMMSE SKNGKLILLP SSIEELLRLA SEKFGGCNFT KITNADNAEI DDLDVIWDGD HLYFSSN
Arabidopsis Description
KAT1At5g46240 [Source:UniProtKB/TrEMBL;Acc:Q67YG3]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.