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Tomato
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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane

Predictor Summary:
  • nucleus 1
  • plasma membrane 5
  • plastid 1
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • golgi 1
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane
Any Predictor:nucleus, plastid, secretory
BaCelLo:nucleus
MultiLoc:plasma membrane
Plant-mPloc:plasma membrane, plastid
PProwler:secretory
WoLF PSORT:plasma membrane
YLoc:plasma membrane
PPI

Inferred distinct locusB in Crop

locusBlocations
Solyc02g070530.2.1
Solyc03g058900.1.1
Solyc08g016500.2.1

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT5G41160.1 Solyc02g070530.2.1 AT5G46240.1 15299147
AT5G41160.1 Solyc03g058900.1.1 AT5G46240.1 15299147
AT5G41160.1 Solyc08g016500.2.1 AT5G46240.1 15299147
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400004320 Potato plasma membrane 95.6 94.31
KRH40250 Soybean endoplasmic reticulum, plasma membrane, vacuole 64.84 65.19
KRH00977 Soybean endoplasmic reticulum, plasma membrane, vacuole 64.56 64.38
CDY12545 Canola plasma membrane 51.65 63.09
CDY36342 Canola endoplasmic reticulum, plasma membrane, vacuole 51.65 62.88
GSMUA_Achr10P... Banana endoplasmic reticulum, plasma membrane, vacuole 50.27 60.6
VIT_15s0021g00650.t01 Wine grape plastid 62.91 60.26
AT1G44750.1 Thale cress plasma membrane 61.81 59.37
GSMUA_Achr5P12690_001 Banana plasma membrane 52.47 54.73
Bra036955.1-P Field mustard plasma membrane 61.54 53.98
CDY14989 Canola plasma membrane 61.26 53.73
CDX71327 Canola plasma membrane 60.99 53.37
Os02t0689200-03 Rice plasma membrane 56.32 53.25
Zm00001d051504_P001 Maize golgi, peroxisome, plasma membrane 55.22 52.34
TraesCS6B01G289900.1 Wheat peroxisome 55.22 51.67
TraesCS6D01G243400.1 Wheat golgi, peroxisome, plasma membrane 55.22 51.54
TraesCS6A01G262900.1 Wheat plasma membrane 54.67 51.03
AT4G08700.1 Thale cress plasma membrane 50.55 50.97
Bra037874.1-P Field mustard plasma membrane 46.43 50.6
AT5G41160.1 Thale cress plasma membrane 49.45 49.45
Zm00001d002515_P001 Maize peroxisome 50.27 49.19
EES11332 Sorghum peroxisome 50.0 48.66
HORVU6Hr1G066740.2 Barley golgi, mitochondrion 55.49 48.33
TraesCS2B01G473900.1 Wheat plasma membrane 50.0 47.77
HORVU2Hr1G105300.1 Barley peroxisome 48.9 47.59
TraesCS2D01G452400.1 Wheat peroxisome 48.9 47.59
TraesCS2B01G474100.1 Wheat peroxisome 48.9 47.59
TraesCS2A01G452400.1 Wheat plasma membrane 49.73 47.38
Zm00001d003417_P001 Maize endoplasmic reticulum, extracellular, vacuole 40.66 47.28
TraesCS2D01G452300.1 Wheat peroxisome 49.73 47.26
TraesCS2D01G452200.1 Wheat plasma membrane 49.45 47.24
TraesCS5A01G413800.1 Wheat peroxisome 48.35 47.06
TraesCS2A01G452600.1 Wheat peroxisome 47.8 46.52
HORVU2Hr1G105340.1 Barley golgi, peroxisome, plasma membrane 48.9 45.52
TraesCS2A01G452500.1 Wheat peroxisome 48.35 45.48
CDY54350 Canola plasma membrane 41.21 45.18
Solyc02g071080.1.1 Tomato endoplasmic reticulum, plasma membrane, plastid, vacuole 30.49 44.58
Solyc08g077380.2.1 Tomato peroxisome, plasma membrane, vacuole 45.88 44.3
Solyc08g077370.2.1 Tomato plasma membrane 40.38 44.01
CDX75141 Canola plasma membrane 40.11 43.98
Solyc02g071110.2.1 Tomato plasma membrane 45.33 43.54
HORVU2Hr1G105360.5 Barley peroxisome 49.18 43.45
HORVU2Hr1G105240.3 Barley peroxisome 48.9 43.2
KXG27004 Sorghum golgi, peroxisome, vacuole 46.7 43.15
EES11334 Sorghum peroxisome 45.05 43.04
Os09t0548600-00 Rice endoplasmic reticulum, extracellular, vacuole 40.38 42.49
TraesCS2B01G473800.1 Wheat endoplasmic reticulum, extracellular, vacuole 40.11 42.32
Zm00001d002514_P001 Maize endoplasmic reticulum, peroxisome, plasma membrane 43.68 41.62
EES05697 Sorghum plastid 56.32 40.92
KXG26473 Sorghum cytosol, peroxisome, plasma membrane 43.41 40.51
TraesCS2B01G474000.1 Wheat cytosol, peroxisome, plasma membrane 49.45 40.27
Solyc02g071090.2.1 Tomato plasma membrane 40.38 39.2
TraesCS2D01G452100.1 Wheat plasma membrane 42.03 39.03
Solyc02g071100.2.1 Tomato nucleus 39.84 38.67
KXG24673 Sorghum peroxisome 41.76 37.07
Solyc03g005810.2.1 Tomato endoplasmic reticulum, extracellular, plastid 24.73 36.73
EES10997 Sorghum plasma membrane 41.76 36.45
Solyc02g071060.2.1 Tomato plasma membrane 38.46 35.44
TraesCS2A01G452300.1 Wheat mitochondrion 42.31 35.24
Solyc02g071050.2.1 Tomato plasma membrane 37.36 35.14
Solyc12g087870.1.1 Tomato plasma membrane 30.77 31.46
Solyc03g005820.2.1 Tomato plasma membrane 35.71 30.95
Solyc10g005160.1.1 Tomato plasma membrane 29.67 30.25
Solyc04g074870.2.1 Tomato extracellular, plasma membrane 29.12 29.94
Solyc10g005150.1.1 Tomato plasma membrane 31.32 29.84
Solyc06g035420.1.1 Tomato extracellular, plasma membrane 25.82 28.57
Solyc07g005660.2.1 Tomato plasma membrane 25.55 28.35
Solyc07g008440.2.1 Tomato plasma membrane 28.57 28.34
Solyc10g005170.1.1 Tomato cytosol, peroxisome, plasma membrane 30.49 27.89
Solyc12g057090.1.1 Tomato plasma membrane 22.53 27.61
Solyc02g082170.1.1 Tomato plasma membrane 31.04 27.49
Solyc04g074880.2.1 Tomato plasma membrane 26.37 27.04
Solyc12g057100.1.1 Tomato cytosol, golgi, plasma membrane 26.65 26.8
HORVU5Hr1G019740.1 Barley cytosol, plastid 24.18 26.43
Solyc12g087880.1.1 Tomato extracellular, plasma membrane, vacuole 11.81 25.29
Zm00001d026042_P001 Maize endoplasmic reticulum, extracellular, plasma membrane 45.88 24.81
Protein Annotations
EnsemblPlants:Solyc01g088550.2.1EnsemblPlantsGene:Solyc01g088550.2GO:GO:0003674GO:GO:0005215GO:GO:0005575GO:GO:0006810
GO:GO:0008150GO:GO:0016020GO:GO:0016021InterPro:PUP_plantPANTHER:PTHR31376PANTHER:PTHR31376:SF2
PFAM:PF16913SEG:segTMHMM:TMhelixUniParc:UPI0002761961UniProt:K4AYP5MapMan:24.2.1.6
Description
No Description!
Coordinates
chr1:-:83331533..83334670
Molecular Weight (calculated)
39499.7 Da
IEP (calculated)
7.956
GRAVY (calculated)
0.697
Length
364 amino acids
Sequence
(BLAST)
001: MADNQQPILQ KDDAQHPMAK LNRLHFWLLV ALNIVFLLVG QATAVILGRF YYEKGGNSKW MATVVQTAAF PLLFIPYLVI SSPQTHSEAS NRPSIITVSV
101: VYLVIGVLVA GDNMLYSIGL LYLSASTYSL ICATQLVFSA VISYFLNHQK FTALIMNSVV VLSLSASLLA VNEDSDKPPG VTKSKYVIGF LVTLAASAMY
201: ALLLSLMQLS FQKVLKKETF SVVLEMQIYT AIVATAVSTV GLFASGEWKT LHGEMGSFTA GKLAYVMTLV WTAIAWQICS VGVVGLVFVV SSLFSNVIST
301: LSLAITPIAS VIILHDTLNG VKVIAMLMAI WGFCTYIYQN YVDDLKASKA PSAVDDSPNE SRSC
Best Arabidopsis Sequence Match ( AT1G44750.2 )
(BLAST)
001: MSGNQEPILV KEESVVGIPT PLLKLKSWQW WVLVSVNIFF LIGGQAASVL LGRFYYDEGG NSKWMATLVQ TAAFPILYIP LLLLPSSASV ESSESSCSLK
101: YIVLIYVLLG VIIAGDNMLY SVGLLYLSAS TYSLICATQL AFNAVFSYFI NAQKFTALIL NSVVLLSFSA ALIALNDDAD TPSGVSRSKY IVGFVCTLAA
201: SALYSLLLSL MQFSFEKILK RETFSVVLEM QIYTSLVATC VSVIGLFASG EWRTLHGEME GYHKGQASYV LTLVWTAVTW QVCSVGVVGL IFLVTSLFSN
301: VISTLSLAVT PLAALVVFRD KMSGVKIMAM LIAIWGFASY VYQNHIDDLK VRQARQQAQA GRVEPPC
Arabidopsis Description
PUP11Probable purine permease 11 [Source:UniProtKB/Swiss-Prot;Acc:Q9LPF6]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.