Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- extracellular 5
- golgi 4
- plasma membrane 6
- endoplasmic reticulum 4
- vacuole 4
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc06g074170.2.1 | |
| Solyc11g065020.1.1 | |
| Solyc11g068750.1.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G18205.1 | Solyc06g074170.2.1 | AT5G22290.1 | 21798944 |
| AT4G18205.1 | Solyc11g068750.1.1 | AT5G22290.1 | 21798944 |
| AT4G18220.1 | Solyc11g065020.1.1 | AT2G13650.1 | 15299147 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400035010 | Potato | endoplasmic reticulum, peroxisome, plasma membrane | 81.43 | 90.24 |
| VIT_10s0003g02850.t01 | Wine grape | plasma membrane | 37.14 | 42.16 |
| Solyc02g071080.1.1 | Tomato | endoplasmic reticulum, plasma membrane, plastid, vacuole | 23.81 | 40.16 |
| Solyc02g071110.2.1 | Tomato | plasma membrane | 35.71 | 39.58 |
| Solyc02g071100.2.1 | Tomato | nucleus | 33.81 | 37.87 |
| CDY08900 | Canola | plasma membrane | 27.38 | 36.98 |
| KRH45390 | Soybean | plasma membrane | 27.62 | 36.25 |
| AT4G18220.1 | Thale cress | plasma membrane | 33.57 | 36.15 |
| Solyc02g071090.2.1 | Tomato | plasma membrane | 32.14 | 36.0 |
| CDY08899 | Canola | cytosol, peroxisome, plasma membrane | 33.33 | 35.9 |
| Solyc01g088550.2.1 | Tomato | plasma membrane | 30.95 | 35.71 |
| CDX76537 | Canola | plasma membrane | 33.1 | 35.64 |
| CDX99493 | Canola | plasma membrane | 32.86 | 35.2 |
| Bra021018.1-P | Field mustard | plasma membrane | 33.33 | 35.18 |
| CDX76536 | Canola | plasma membrane | 24.52 | 35.15 |
| CDY08897 | Canola | plasma membrane | 32.62 | 35.04 |
| Bra013292.1-P | Field mustard | plasma membrane | 32.38 | 34.87 |
| CDX78835 | Canola | plasma membrane | 32.38 | 34.78 |
| KRG98518 | Soybean | plasma membrane | 34.05 | 34.54 |
| Bra040924.1-P | Field mustard | plasma membrane | 32.14 | 34.53 |
| KRH46353 | Soybean | plasma membrane | 34.05 | 34.46 |
| AT4G18210.1 | Thale cress | plasma membrane | 31.9 | 34.36 |
| CDX76538 | Canola | plasma membrane | 31.9 | 34.18 |
| CDY08895 | Canola | plasma membrane | 32.14 | 34.18 |
| CDY01525 | Canola | plasma membrane | 30.71 | 34.13 |
| Bra040925.1-P | Field mustard | plasma membrane | 31.67 | 34.1 |
| CDX76540 | Canola | plasma membrane | 32.14 | 34.01 |
| Bra013291.1-P | Field mustard | plasma membrane | 29.76 | 33.78 |
| VIT_10s0003g02840.t01 | Wine grape | plasma membrane | 35.24 | 33.56 |
| AT4G18195.1 | Thale cress | plasma membrane | 31.43 | 33.5 |
| CDX90414 | Canola | plasma membrane | 29.52 | 33.07 |
| AT4G18205.1 | Thale cress | plasma membrane | 29.29 | 32.63 |
| Solyc08g077380.2.1 | Tomato | peroxisome, plasma membrane, vacuole | 29.05 | 32.36 |
| Solyc02g071050.2.1 | Tomato | plasma membrane | 29.76 | 32.3 |
| Solyc02g071060.2.1 | Tomato | plasma membrane | 30.24 | 32.15 |
| Solyc08g077370.2.1 | Tomato | plasma membrane | 25.24 | 31.74 |
| Solyc03g005810.2.1 | Tomato | endoplasmic reticulum, extracellular, plastid | 18.33 | 31.43 |
| AT4G18197.1 | Thale cress | plasma membrane | 29.05 | 31.28 |
| Solyc12g057090.1.1 | Tomato | plasma membrane | 19.52 | 27.61 |
| Solyc10g005160.1.1 | Tomato | plasma membrane | 23.33 | 27.45 |
| Solyc12g057100.1.1 | Tomato | cytosol, golgi, plasma membrane | 23.33 | 27.07 |
| Solyc10g005150.1.1 | Tomato | plasma membrane | 23.33 | 25.65 |
| Solyc07g008440.2.1 | Tomato | plasma membrane | 22.38 | 25.61 |
| Solyc06g035420.1.1 | Tomato | extracellular, plasma membrane | 20.0 | 25.53 |
| Solyc07g005660.2.1 | Tomato | plasma membrane | 19.52 | 25.0 |
| Solyc10g005170.1.1 | Tomato | cytosol, peroxisome, plasma membrane | 23.33 | 24.62 |
| Solyc04g074870.2.1 | Tomato | extracellular, plasma membrane | 20.71 | 24.58 |
| Solyc12g087870.1.1 | Tomato | plasma membrane | 20.71 | 24.44 |
| Solyc02g082170.1.1 | Tomato | plasma membrane | 23.1 | 23.6 |
| Solyc04g074880.2.1 | Tomato | plasma membrane | 19.76 | 23.38 |
| Solyc12g087880.1.1 | Tomato | extracellular, plasma membrane, vacuole | 8.81 | 21.76 |
Protein Annotations
| EnsemblPlants:Solyc03g005820.2.1 | EnsemblPlantsGene:Solyc03g005820.2 | GO:GO:0003674 | GO:GO:0005215 | GO:GO:0005575 | GO:GO:0006810 |
| GO:GO:0008150 | GO:GO:0016020 | GO:GO:0016021 | InterPro:PUP_plant | PANTHER:PTHR31376 | PANTHER:PTHR31376:SF17 |
| PFAM:PF16913 | SEG:seg | TMHMM:TMhelix | UniParc:UPI000276760B | UniProt:K4BE05 | MapMan:24.2.1.6 |
Description
No Description!
Coordinates
chr3:-:553374..558003
Molecular Weight (calculated)
47186.0 Da
IEP (calculated)
8.614
GRAVY (calculated)
0.427
Length
420 amino acids
Sequence
(BLAST)
(BLAST)
001: MKYKATYNLL YLKVLLKAFL THSSHSTYQH ILYVSFPILG KTKKDNSMEE VQQKLLDIPN EEICEDENSN IESSGSTNCC SYFAKHKWWY QVAIFTVFTI
101: IGEVVTSLLV KTYFTKGGKS IWLVSLVQNA GFPILLPFLY TVSLKNHSQI EVIKGNQEPH ICIIFLVYAV LGVLLGGVSV FNSIGLKYLQ VSTHSLTSTT
201: RLGFSIIFSL FHNAHKFTPV IVNSLVLVTA ASVILVVHNN ESGETSSGKF LLGFFSTIGG SLMYSLTEFS YRKIIKAREF IDIIEMSIYQ TLVASIVILL
301: GFFISGDWKN LSMEMEKYQL GKLVIILSFI AMSCQLNVVA SIGLVFKVNP LMSNVFNNLG APITPIFAVV FLHDKIKGLK LVVMFLAFWG FGSQIYQQYL
401: NYMEAKEELI EQNSREVSSS
101: IGEVVTSLLV KTYFTKGGKS IWLVSLVQNA GFPILLPFLY TVSLKNHSQI EVIKGNQEPH ICIIFLVYAV LGVLLGGVSV FNSIGLKYLQ VSTHSLTSTT
201: RLGFSIIFSL FHNAHKFTPV IVNSLVLVTA ASVILVVHNN ESGETSSGKF LLGFFSTIGG SLMYSLTEFS YRKIIKAREF IDIIEMSIYQ TLVASIVILL
301: GFFISGDWKN LSMEMEKYQL GKLVIILSFI AMSCQLNVVA SIGLVFKVNP LMSNVFNNLG APITPIFAVV FLHDKIKGLK LVVMFLAFWG FGSQIYQQYL
401: NYMEAKEELI EQNSREVSSS
001: MMELESETQE LHLHVNGEPE GKFSTEERSH KYSWRLRVSL YVTLLLAGET IATLLGRLYY EKGGKSTWLE TLVQLVGFPL TLPCYYYLKP EPSKTKTITK
101: KTTSSFLTLS LVYIGLGLLV AGHCILYSFG LLYLPVSTFS LISASQLAFN AVFSYFLNSQ KITPFILNSL VLLTISSTLL VIQHEPESPS STSKSAAKSK
201: YVIGYICAVG SSAGYSLVLS LTDYAFEKIL KKYTFKAILD MATYPSMVAT CVVVVGLFGS GGWKKLSTEM EEFQLGKSSY ILINIGSTIS WQACLIGSVG
301: LIIEVSSLFS NVISTLCLPV VPVLAVVFFR DEMSGIKLVA MFLAIWGFVS YGYQHYVNDR KPEEDQELPQ SKEEEEQKQV DTIHVQA
101: KTTSSFLTLS LVYIGLGLLV AGHCILYSFG LLYLPVSTFS LISASQLAFN AVFSYFLNSQ KITPFILNSL VLLTISSTLL VIQHEPESPS STSKSAAKSK
201: YVIGYICAVG SSAGYSLVLS LTDYAFEKIL KKYTFKAILD MATYPSMVAT CVVVVGLFGS GGWKKLSTEM EEFQLGKSSY ILINIGSTIS WQACLIGSVG
301: LIIEVSSLFS NVISTLCLPV VPVLAVVFFR DEMSGIKLVA MFLAIWGFVS YGYQHYVNDR KPEEDQELPQ SKEEEEQKQV DTIHVQA
Arabidopsis Description
PUP6Probable purine permease 6 [Source:UniProtKB/Swiss-Prot;Acc:O49722]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.