Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 1
- plasma membrane 5
- plastid 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_04s0044g01330.t01 | |
| VIT_06s0080g00970.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G18205.1 | VIT_06s0080g00970.t01 | AT5G22290.1 | 21798944 |
| AT4G18220.1 | VIT_04s0044g01330.t01 | AT2G13650.1 | 15299147 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_10s0003g02850.t01 | Wine grape | plasma membrane | 61.0 | 72.7 |
| Solyc02g071110.2.1 | Tomato | plasma membrane | 47.62 | 55.41 |
| VIT_02s0012g00730.t01 | Wine grape | plasma membrane | 48.3 | 54.76 |
| PGSC0003DMT400025116 | Potato | plasma membrane | 47.85 | 54.66 |
| CDY08900 | Canola | plasma membrane | 38.32 | 54.34 |
| KRH45390 | Soybean | plasma membrane | 39.23 | 54.06 |
| KRG98518 | Soybean | plasma membrane | 50.11 | 53.38 |
| Bra040924.1-P | Field mustard | plasma membrane | 47.17 | 53.2 |
| CDY08897 | Canola | plasma membrane | 47.17 | 53.2 |
| Bra013292.1-P | Field mustard | plasma membrane | 46.94 | 53.08 |
| CDY08899 | Canola | cytosol, peroxisome, plasma membrane | 46.94 | 53.08 |
| CDX99493 | Canola | plasma membrane | 47.17 | 53.06 |
| CDX78835 | Canola | plasma membrane | 46.94 | 52.94 |
| AT4G18210.1 | Thale cress | plasma membrane | 46.71 | 52.82 |
| CDX76537 | Canola | plasma membrane | 46.71 | 52.82 |
| KRH46353 | Soybean | plasma membrane | 49.66 | 52.77 |
| AT4G18220.1 | Thale cress | plasma membrane | 46.03 | 52.05 |
| CDX76538 | Canola | plasma membrane | 46.26 | 52.04 |
| Bra021018.1-P | Field mustard | plasma membrane | 46.71 | 51.76 |
| CDX76536 | Canola | plasma membrane | 32.88 | 49.49 |
| PGSC0003DMT400035009 | Potato | endoplasmic reticulum, extracellular | 16.55 | 48.34 |
| VIT_19s0014g00150.t01 | Wine grape | plasma membrane | 40.82 | 47.49 |
| Bra013291.1-P | Field mustard | plasma membrane | 39.0 | 46.49 |
| Bra040925.1-P | Field mustard | plasma membrane | 41.04 | 46.41 |
| CDX90414 | Canola | plasma membrane | 39.46 | 46.4 |
| PGSC0003DMT400025123 | Potato | plasma membrane | 41.04 | 46.17 |
| CDY01525 | Canola | plasma membrane | 39.46 | 46.03 |
| AT4G18205.1 | Thale cress | plasma membrane | 39.23 | 45.89 |
| CDX76540 | Canola | plasma membrane | 41.04 | 45.59 |
| CDY08895 | Canola | plasma membrane | 40.82 | 45.57 |
| AT4G18195.1 | Thale cress | plasma membrane | 40.59 | 45.43 |
| Solyc02g071060.2.1 | Tomato | plasma membrane | 40.36 | 45.06 |
| VIT_15s0021g00650.t01 | Wine grape | plastid | 38.32 | 44.47 |
| Solyc02g071080.1.1 | Tomato | endoplasmic reticulum, plasma membrane, plastid, vacuole | 24.94 | 44.18 |
| AT4G18197.1 | Thale cress | plasma membrane | 38.78 | 43.85 |
| Solyc03g005810.2.1 | Tomato | endoplasmic reticulum, extracellular, plastid | 22.68 | 40.82 |
| Solyc02g071100.2.1 | Tomato | nucleus | 34.69 | 40.8 |
| Solyc02g071090.2.1 | Tomato | plasma membrane | 34.47 | 40.53 |
| Solyc02g071050.2.1 | Tomato | plasma membrane | 35.15 | 40.05 |
| PGSC0003DMT400035010 | Potato | endoplasmic reticulum, peroxisome, plasma membrane | 34.01 | 39.58 |
| PGSC0003DMT400025125 | Potato | plasma membrane | 35.15 | 39.54 |
| PGSC0003DMT400025122 | Potato | plasma membrane | 33.56 | 39.26 |
| PGSC0003DMT400025118 | Potato | plasma membrane | 33.79 | 37.91 |
| Solyc03g005820.2.1 | Tomato | plasma membrane | 33.56 | 35.24 |
| VIT_18s0001g06940.t01 | Wine grape | endoplasmic reticulum, plasma membrane | 25.85 | 32.48 |
| VIT_18s0001g06950.t01 | Wine grape | plasma membrane | 24.72 | 31.23 |
| VIT_18s0001g06910.t01 | Wine grape | plasma membrane | 24.72 | 31.05 |
| VIT_18s0089g01410.t01 | Wine grape | plasma membrane | 23.58 | 30.23 |
| VIT_11s0016g00010.t01 | Wine grape | endoplasmic reticulum, plasma membrane, vacuole | 20.86 | 25.99 |
| VIT_18s0001g06300.t01 | Wine grape | cytosol, endoplasmic reticulum, plasma membrane | 18.37 | 25.63 |
Protein Annotations
| EntrezGene:100267617 | wikigene:100267617 | MapMan:24.2.1.6 | ProteinID:CCB55762 | ProteinID:CCB55762.1 | UniProt:F6HMH3 |
| EMBL:FN595992 | GO:GO:0003674 | GO:GO:0005215 | GO:GO:0005575 | GO:GO:0006810 | GO:GO:0008150 |
| GO:GO:0016020 | GO:GO:0016021 | EntrezGene:LOC100267617 | wikigene:LOC100267617 | PFAM:PF16913 | PANTHER:PTHR31376 |
| PANTHER:PTHR31376:SF17 | InterPro:PUP_plant | SUPFAM:SSF103481 | TMHMM:TMhelix | UniParc:UPI0002108E0F | ArrayExpress:VIT_10s0003g02840 |
| EnsemblPlantsGene:VIT_10s0003g02840 | EnsemblPlants:VIT_10s0003g02840.t01 | RefSeq:XP_002274345 | RefSeq:XP_002274345.2 | SEG:seg | : |
Description
No Description!
Coordinates
chr10:+:4924753..4933856
Molecular Weight (calculated)
49104.7 Da
IEP (calculated)
6.928
GRAVY (calculated)
0.320
Length
441 amino acids
Sequence
(BLAST)
(BLAST)
001: MGETRELQLQ VMGYEAKEEN SGEPDAGHQS TVPQIRGRIW WIQMGVYSFF LLSGQTVATL LGRLYFDKGG NSKWMSTFVQ LAGFPLLLPF YCISLPKNPT
101: TDSIHMDRPP ALTFALLYVS LGILLAGDCL LYSYGLSYLP VSTYSLICAS QLGFNALFSF FLNAQKFTPF IVNSLVLLTI SSALLVFQTD DSSDSKKISK
201: EKYITGFLCT VLASAGYALL ISLTQLAFRK IIKRNTMRAM LDLIIYQSIV ATCVAVAGLF ASGEWKDLKK EMEGYELGKI SYLMTLIWTA AGWDVFSIGA
301: VGLIFDVSSL FSNVISTLGL PIIPVLALVF FHDKLDGVKV IAMLLAVWGF VSYMYQHYLD DSKSKAESGN VDQVSQASTS KEVSPRLFEL TNTLKTVFIP
401: TKDNRRLLHE FSCWNWHISV FILHWVHSSS DSSCTSLTNQ D
101: TDSIHMDRPP ALTFALLYVS LGILLAGDCL LYSYGLSYLP VSTYSLICAS QLGFNALFSF FLNAQKFTPF IVNSLVLLTI SSALLVFQTD DSSDSKKISK
201: EKYITGFLCT VLASAGYALL ISLTQLAFRK IIKRNTMRAM LDLIIYQSIV ATCVAVAGLF ASGEWKDLKK EMEGYELGKI SYLMTLIWTA AGWDVFSIGA
301: VGLIFDVSSL FSNVISTLGL PIIPVLALVF FHDKLDGVKV IAMLLAVWGF VSYMYQHYLD DSKSKAESGN VDQVSQASTS KEVSPRLFEL TNTLKTVFIP
401: TKDNRRLLHE FSCWNWHISV FILHWVHSSS DSSCTSLTNQ D
001: MTADQELQII VRQGKEPNPT VQDERNSVSS SQAEVSHSNT YKRWLRVTLY TFFVISGQTV ATILGRVYYD NGGNSKWLAT VVQLVGFPVL LPYYILSFKT
101: HATTDRDGKR TSPRNRVLVY VVLGLLVGAD CYLYSIGLLY LPVSTYSLIC ASQLAFNAFF SYFLNSQKLT PIILNSLFLL TISSTLLAFN NEETDSTKVT
201: KGEYVKGFIC TVAASAGYGL VLSLQQLAFL KVLKKQNFSE VMDMIIYVSL VASCVSVVGL FASSEWKTLS SEMDNYKHGK VSYIMNLVWT AVTWQVFSIG
301: GTGLIFELSS LFSNAISVLG LPVVPILAVI IFHDKMNGLK VISMILAIWG FTSYVYQQYL DDKNLKKNHE ITTTESPDPP EAEESTWQSK
101: HATTDRDGKR TSPRNRVLVY VVLGLLVGAD CYLYSIGLLY LPVSTYSLIC ASQLAFNAFF SYFLNSQKLT PIILNSLFLL TISSTLLAFN NEETDSTKVT
201: KGEYVKGFIC TVAASAGYGL VLSLQQLAFL KVLKKQNFSE VMDMIIYVSL VASCVSVVGL FASSEWKTLS SEMDNYKHGK VSYIMNLVWT AVTWQVFSIG
301: GTGLIFELSS LFSNAISVLG LPVVPILAVI IFHDKMNGLK VISMILAIWG FTSYVYQQYL DDKNLKKNHE ITTTESPDPP EAEESTWQSK
Arabidopsis Description
PUP10Probable purine permease 10 [Source:UniProtKB/Swiss-Prot;Acc:O49725]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.