Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, plastid, vacuole, plasma membrane
Predictor Summary:
Predictor Summary:
- plastid 5
- endoplasmic reticulum 3
- plasma membrane 4
- extracellular 2
- vacuole 3
- golgi 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc06g074170.2.1 | |
| Solyc11g065020.1.1 | |
| Solyc11g068750.1.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G18205.1 | Solyc06g074170.2.1 | AT5G22290.1 | 21798944 |
| AT4G18205.1 | Solyc11g068750.1.1 | AT5G22290.1 | 21798944 |
| AT4G18220.1 | Solyc11g065020.1.1 | AT2G13650.1 | 15299147 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc02g071100.2.1 | Tomato | nucleus | 92.77 | 61.6 |
| Solyc02g071090.2.1 | Tomato | plasma membrane | 89.96 | 59.73 |
| PGSC0003DMT400025118 | Potato | plasma membrane | 87.55 | 55.47 |
| Solyc02g071110.2.1 | Tomato | plasma membrane | 46.99 | 30.87 |
| Solyc01g088550.2.1 | Tomato | plasma membrane | 44.58 | 30.49 |
| VIT_10s0003g02850.t01 | Wine grape | plasma membrane | 44.18 | 29.73 |
| KRH45390 | Soybean | plasma membrane | 38.15 | 29.69 |
| CDX99493 | Canola | plasma membrane | 44.18 | 28.06 |
| CDY08900 | Canola | plasma membrane | 34.94 | 27.97 |
| Bra013292.1-P | Field mustard | plasma membrane | 43.78 | 27.95 |
| CDX78835 | Canola | plasma membrane | 43.78 | 27.88 |
| Solyc02g071060.2.1 | Tomato | plasma membrane | 44.18 | 27.85 |
| Solyc03g005810.2.1 | Tomato | endoplasmic reticulum, extracellular, plastid | 27.31 | 27.76 |
| Bra021018.1-P | Field mustard | plasma membrane | 44.18 | 27.64 |
| CDY08897 | Canola | plasma membrane | 42.97 | 27.37 |
| Bra040924.1-P | Field mustard | plasma membrane | 42.97 | 27.37 |
| KRG98518 | Soybean | plasma membrane | 45.38 | 27.29 |
| CDX90414 | Canola | plasma membrane | 40.96 | 27.2 |
| CDX76537 | Canola | plasma membrane | 42.57 | 27.18 |
| AT4G18210.1 | Thale cress | plasma membrane | 42.57 | 27.18 |
| Solyc08g077380.2.1 | Tomato | peroxisome, plasma membrane, vacuole | 40.96 | 27.06 |
| CDY08899 | Canola | cytosol, peroxisome, plasma membrane | 42.17 | 26.92 |
| CDX76538 | Canola | plasma membrane | 42.17 | 26.79 |
| CDY01525 | Canola | plasma membrane | 40.56 | 26.72 |
| KRH46353 | Soybean | plasma membrane | 44.18 | 26.51 |
| AT4G18220.1 | Thale cress | plasma membrane | 41.37 | 26.41 |
| AT4G18205.1 | Thale cress | plasma membrane | 39.36 | 25.99 |
| Bra013291.1-P | Field mustard | plasma membrane | 37.75 | 25.41 |
| Bra040925.1-P | Field mustard | plasma membrane | 39.76 | 25.38 |
| Solyc02g071050.2.1 | Tomato | plasma membrane | 39.36 | 25.32 |
| Solyc12g087880.1.1 | Tomato | extracellular, plasma membrane, vacuole | 17.27 | 25.29 |
| Solyc08g077370.2.1 | Tomato | plasma membrane | 33.73 | 25.15 |
| VIT_10s0003g02840.t01 | Wine grape | plasma membrane | 44.18 | 24.94 |
| CDX76540 | Canola | plasma membrane | 39.76 | 24.94 |
| CDY08895 | Canola | plasma membrane | 39.36 | 24.81 |
| AT4G18195.1 | Thale cress | plasma membrane | 38.55 | 24.37 |
| AT4G18197.1 | Thale cress | plasma membrane | 38.15 | 24.36 |
| Solyc03g005820.2.1 | Tomato | plasma membrane | 40.16 | 23.81 |
| Solyc12g057090.1.1 | Tomato | plasma membrane | 26.51 | 22.22 |
| CDX76536 | Canola | plasma membrane | 25.3 | 21.5 |
| Solyc12g057100.1.1 | Tomato | cytosol, golgi, plasma membrane | 30.12 | 20.72 |
| Solyc06g035420.1.1 | Tomato | extracellular, plasma membrane | 27.31 | 20.67 |
| Solyc12g087870.1.1 | Tomato | plasma membrane | 29.32 | 20.51 |
| Solyc04g074870.2.1 | Tomato | extracellular, plasma membrane | 28.51 | 20.06 |
| Solyc07g008440.2.1 | Tomato | plasma membrane | 28.92 | 19.62 |
| Solyc10g005160.1.1 | Tomato | plasma membrane | 27.31 | 19.05 |
| Solyc04g074880.2.1 | Tomato | plasma membrane | 24.9 | 17.46 |
| Solyc10g005150.1.1 | Tomato | plasma membrane | 25.7 | 16.75 |
| Solyc10g005170.1.1 | Tomato | cytosol, peroxisome, plasma membrane | 26.51 | 16.58 |
| Solyc02g082170.1.1 | Tomato | plasma membrane | 26.91 | 16.3 |
| Solyc07g005660.2.1 | Tomato | plasma membrane | 20.08 | 15.24 |
Protein Annotations
| EnsemblPlants:Solyc02g071080.1.1 | EnsemblPlantsGene:Solyc02g071080.1 | GO:GO:0003674 | GO:GO:0005215 | GO:GO:0005575 | GO:GO:0006810 |
| GO:GO:0008150 | GO:GO:0016020 | GO:GO:0016021 | InterPro:PUP_plant | PANTHER:PTHR31376 | PANTHER:PTHR31376:SF17 |
| PFAM:PF16913 | SEG:seg | TMHMM:TMhelix | UniParc:UPI0002768BF4 | UniProt:K4B884 | MapMan:24.2.1.6 |
Description
No Description!
Coordinates
chr2:-:40573395..40574144
Molecular Weight (calculated)
27280.0 Da
IEP (calculated)
6.524
GRAVY (calculated)
0.460
Length
249 amino acids
Sequence
(BLAST)
(BLAST)
001: MSFTVGVQYL PASTYSLISG TQLAFNAITS FFLNGHKITA IILNSVVLLS FSSSVVIFQN ETGDSGEISQ KSLLIGFAVT TFGSLGYALQ FSLTELAFQK
101: VFKSNTLKQV MKMSFFIGFY VTIASLIGLF ASGNWNDLEK EIGEYRTGKS SYVINLICTA ISWQLYAVGS VGLVYKASAL FSNVIINLGS STVPIFAMVF
201: LKDRMNGLKV FSLLLGLWGY ASYIYQHYLD DLEAKTSEVK SSDDQADNL
101: VFKSNTLKQV MKMSFFIGFY VTIASLIGLF ASGNWNDLEK EIGEYRTGKS SYVINLICTA ISWQLYAVGS VGLVYKASAL FSNVIINLGS STVPIFAMVF
201: LKDRMNGLKV FSLLLGLWGY ASYIYQHYLD DLEAKTSEVK SSDDQADNL
001: MATLVQTAAF PILYIPLLLL PSSASVESSE SSCSLKYIVL IYVLLGVIIA GDNMLYSVGL LYLSASTYSL ICATQLAFNA VFSYFINAQK FTALILNSVV
101: LLSFSAALIA LNDDADTPSG VSRSKYIVGF VCTLAASALY SLLLSLMQFS FEKILKRETF SVVLEMQIYT SLVATCVSVI GLFASGEWRT LHGEMEGYHK
201: GQASYVLTLV WTAVTWQVCS VGVVGLIFLV TSLFSNVIST LSLAVTPLAA LVVFRDKMSG VKIMAMLIAI WGFASYVYQN HIDDLKVRQA RQQAQAGRVE
301: PPC
101: LLSFSAALIA LNDDADTPSG VSRSKYIVGF VCTLAASALY SLLLSLMQFS FEKILKRETF SVVLEMQIYT SLVATCVSVI GLFASGEWRT LHGEMEGYHK
201: GQASYVLTLV WTAVTWQVCS VGVVGLIFLV TSLFSNVIST LSLAVTPLAA LVVFRDKMSG VKIMAMLIAI WGFASYVYQN HIDDLKVRQA RQQAQAGRVE
301: PPC
Arabidopsis Description
PUP11Probable purine permease 11 [Source:UniProtKB/Swiss-Prot;Acc:Q9LPF6]
SUBAcon: [endoplasmic reticulum,vacuole,plasma membrane]
SUBAcon: [endoplasmic reticulum,vacuole,plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.