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Tomato
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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane

Predictor Summary:
  • nucleus 1
  • plasma membrane 3
  • plastid 1
  • mitochondrion 1
  • peroxisome 1
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane
Any Predictor:mitochondrion, nucleus, peroxisome, plasma membrane, plastid
BaCelLo:nucleus
MultiLoc:plasma membrane
Plant-mPloc:plasma membrane, plastid
PProwler:mitochondrion
WoLF PSORT:plasma membrane
YLoc:peroxisome
PPI

Inferred distinct locusB in Crop

locusBlocations
Solyc02g071920.2.1
Solyc03g005980.2.1

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G30840.1 Solyc02g071920.2.1 AT4G19030.1 21798944
AT1G30840.1 Solyc03g005980.2.1 AT4G19030.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400090756 Potato endoplasmic reticulum, extracellular, vacuole 33.51 88.89
Solyc10g005160.1.1 Tomato plasma membrane 72.77 77.87
Solyc10g005170.1.1 Tomato cytosol, peroxisome, plasma membrane 73.3 70.35
VIT_18s0089g01410.t01 Wine grape plasma membrane 58.12 64.53
Solyc02g082170.1.1 Tomato plasma membrane 60.99 56.69
Bra023141.1-P Field mustard plasma membrane 57.59 56.27
Bra023144.1-P Field mustard endoplasmic reticulum, peroxisome, plasma membrane 57.59 56.27
CDY02338 Canola plasma membrane 47.12 56.25
AT1G30840.1 Thale cress peroxisome, plasma membrane, vacuole 54.97 54.97
CDY09527 Canola plasma membrane 45.81 54.69
CDY09533 Canola plasma membrane 45.81 54.69
KRH37148 Soybean cytosol, peroxisome, plasma membrane 57.33 54.61
KRH12149 Soybean plasma membrane 57.59 54.46
KRH12150 Soybean plasma membrane 50.79 54.19
KRH37147 Soybean nucleus, peroxisome, plasma membrane 57.85 54.03
KRH37149 Soybean plasma membrane 57.07 53.56
GSMUA_Achr6P30590_001 Banana endoplasmic reticulum, peroxisome, plasma membrane 44.5 49.42
GSMUA_Achr3P16440_001 Banana extracellular, peroxisome, plastid 46.07 46.56
GSMUA_Achr9P06170_001 Banana cytosol 44.76 45.48
TraesCS3B01G300900.1 Wheat plastid 43.72 43.95
TraesCS3D01G267700.1 Wheat plastid 43.72 43.6
TraesCS3A01G267500.1 Wheat plastid 43.46 43.34
EES18657 Sorghum mitochondrion 38.74 42.9
Zm00001d038965_P001 Maize mitochondrion, plastid 40.58 42.35
OQU78406 Sorghum plastid 40.58 42.01
HORVU3Hr1G062690.1 Barley plastid 43.72 41.75
GSMUA_Achr8P27440_001 Banana mitochondrion 45.81 41.37
Os01t0680200-01 Rice cytosol, plasma membrane, vacuole 41.88 41.34
Zm00001d043858_P001 Maize vacuole 42.41 40.91
Zm00001d011603_P001 Maize endoplasmic reticulum, plasma membrane, plastid, vacuole 41.1 40.78
Os01t0504100-01 Rice plasma membrane 40.31 40.63
EES01264 Sorghum plasma membrane 41.1 40.57
Os05t0556800-01 Rice mitochondrion 40.58 40.47
TraesCS1D01G393900.1 Wheat plastid 41.1 39.85
TraesCS1A01G386000.1 Wheat plastid 39.01 39.63
HORVU1Hr1G085140.1 Barley endoplasmic reticulum 39.01 39.42
TraesCS1B01G413400.1 Wheat plastid 39.01 39.31
TraesCS1D01G394000.1 Wheat plastid 38.74 39.05
TraesCS1A01G385800.1 Wheat plastid 41.1 38.86
HORVU1Hr1G085120.1 Barley plastid 40.58 38.75
TraesCS1D01G394100.1 Wheat plastid 40.05 37.87
TraesCS1B01G413500.1 Wheat plastid 40.05 37.87
TraesCS1A01G386100.1 Wheat plastid 40.05 37.87
HORVU1Hr1G085230.1 Barley mitochondrion 40.05 37.59
TraesCS1B01G413300.1 Wheat mitochondrion 41.1 37.2
Solyc12g087870.1.1 Tomato plasma membrane 34.29 36.8
Solyc07g008440.2.1 Tomato plasma membrane 34.29 35.69
HORVU1Hr1G085150.1 Barley plastid 38.74 34.91
Solyc06g035420.1.1 Tomato extracellular, plasma membrane 28.27 32.83
Solyc04g074870.2.1 Tomato extracellular, plasma membrane 29.58 31.92
Solyc01g088550.2.1 Tomato plasma membrane 29.84 31.32
Solyc04g074880.2.1 Tomato plasma membrane 28.27 30.42
Solyc12g057090.1.1 Tomato plasma membrane 22.77 29.29
Solyc12g057100.1.1 Tomato cytosol, golgi, plasma membrane 27.75 29.28
Solyc07g005660.2.1 Tomato plasma membrane 23.82 27.74
Solyc08g077380.2.1 Tomato peroxisome, plasma membrane, vacuole 27.23 27.59
Solyc08g077370.2.1 Tomato plasma membrane 23.56 26.95
Solyc12g087880.1.1 Tomato extracellular, plasma membrane, vacuole 11.52 25.88
Solyc02g071110.2.1 Tomato plasma membrane 25.65 25.86
Solyc02g071080.1.1 Tomato endoplasmic reticulum, plasma membrane, plastid, vacuole 16.75 25.7
Solyc02g071090.2.1 Tomato plasma membrane 24.35 24.8
Solyc02g071050.2.1 Tomato plasma membrane 24.61 24.29
Solyc02g071100.2.1 Tomato nucleus 23.56 24.0
Solyc02g071060.2.1 Tomato plasma membrane 24.61 23.8
Solyc03g005820.2.1 Tomato plasma membrane 25.65 23.33
Solyc03g005810.2.1 Tomato endoplasmic reticulum, extracellular, plastid 12.83 20.0
GSMUA_Achr10P... Banana cytosol, extracellular, golgi 0.79 2.56
Protein Annotations
EnsemblPlants:Solyc10g005150.1.1EnsemblPlantsGene:Solyc10g005150.1GO:GO:0003674GO:GO:0005215GO:GO:0005575GO:GO:0006810
GO:GO:0008150GO:GO:0016020GO:GO:0016021InterPro:PUP_plantPANTHER:PTHR31376PANTHER:PTHR31376:SF3
PFAM:PF16913SEG:segSUPFAM:SSF103481TMHMM:TMhelixUniParc:UPI000276C550UniProt:K4CX48
MapMan:24.2.1.6:::::
Description
No Description!
Coordinates
chr10:-:131493..132641
Molecular Weight (calculated)
42719.4 Da
IEP (calculated)
8.796
GRAVY (calculated)
0.328
Length
382 amino acids
Sequence
(BLAST)
001: MEFVGEYQSE ITNDLMIQND HQVEETGSSS SASTTSNGGT NKRNLTLLII NYLLLFSGSI SSSLLSKFYF NHKGNSRWVS TWVQSAGFPL LLLPIYSPFY
101: VFKSTHRKPF TTFTPKMLLL SIVIGFFLGL NNLLYSWGNS YLSVSTNSLL LSSQLVFTLF TSVIIVKQKV TYSNVTCVVL LTLSSVLLAV NSNHDKPKGI
201: TRKKYFIGFF STLGAGLLFS LYLPLMEKIY KHVYCYSMVM EMQMVMELTA TVFAMLGMII DGGFTEMINE SKQVFDMGEK AYWITVMLNV VTWQFCFMGT
301: AGMVFITSSL TGGVCMTALM AVNVLAGVIV YGDNFGLIKI ISTILCVWGF GSYLYGLYKK EKEKKKKKED SSTDNDDQHS VA
Best Arabidopsis Sequence Match ( AT1G30840.1 )
(BLAST)
001: MSDGRVNADP QQEENMVKPP VKRSLTLLIV TYFFLFFGSI ASSLLAKYYF VYGGSSRWVS TWVQSAGFPL LLILIYFPHY VLKTTTRRPF TRFTLRHLIF
101: SVLIGLVLGF NNFLFSWGTS YLPVSTSSLL LSTQLVFTLI LSRIIVKQKI TFSNLNCVVL LTLSSVLLAL DSSKDKPSGL TKTKYFIGYV STIGAGLLFA
201: LYLPVTEKLY RTVYCYAMVM EVQLVMEFAA TVFATIGMAC EGGFKEMVKE ANHVFTKGPT FYWTFAILAN VVTWQLSFAA TSGMVYLTSG ITGGICMTAL
301: LAMNVIGGVV AYGDVFGGVK IVSTVLCIWG FSSYTYGMYM KMKKEEKEKG EYSGVKTTED SGEMEVEMGN VKDDVAAADD RA
Arabidopsis Description
PUP4Probable purine permease 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9SY29]
SUBAcon: [peroxisome,vacuole,plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.