Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- plasma membrane 2
- plastid 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- golgi 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| GSMUA_Achr4P10230_001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G30840.1 | GSMUA_Achr4P10230_001 | AT4G19030.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr3P16440_001 | Banana | extracellular, peroxisome, plastid | 76.06 | 75.66 |
| GSMUA_Achr8P27440_001 | Banana | mitochondrion | 72.07 | 64.07 |
| GSMUA_Achr6P30590_001 | Banana | endoplasmic reticulum, peroxisome, plasma membrane | 55.59 | 60.76 |
| PGSC0003DMT400086024 | Potato | cytosol, endoplasmic reticulum, extracellular | 19.41 | 51.77 |
| VIT_18s0089g01410.t01 | Wine grape | plasma membrane | 47.34 | 51.74 |
| Os01t0504100-01 | Rice | plasma membrane | 51.86 | 51.45 |
| Solyc10g005160.1.1 | Tomato | plasma membrane | 48.14 | 50.7 |
| CDY02338 | Canola | plasma membrane | 39.89 | 46.88 |
| Bra023141.1-P | Field mustard | plasma membrane | 48.67 | 46.8 |
| Bra023144.1-P | Field mustard | endoplasmic reticulum, peroxisome, plasma membrane | 48.67 | 46.8 |
| PGSC0003DMT400090756 | Potato | endoplasmic reticulum, extracellular, vacuole | 17.82 | 46.53 |
| CDY09533 | Canola | plasma membrane | 39.36 | 46.25 |
| CDY09527 | Canola | plasma membrane | 39.1 | 45.94 |
| AT1G30840.1 | Thale cress | peroxisome, plasma membrane, vacuole | 46.54 | 45.81 |
| Solyc10g005170.1.1 | Tomato | cytosol, peroxisome, plasma membrane | 48.14 | 45.48 |
| PGSC0003DMT400090938 | Potato | endoplasmic reticulum, extracellular | 19.15 | 45.28 |
| Solyc10g005150.1.1 | Tomato | plasma membrane | 45.48 | 44.76 |
| Solyc02g082170.1.1 | Tomato | plasma membrane | 48.67 | 44.53 |
| KRH37148 | Soybean | cytosol, peroxisome, plasma membrane | 46.54 | 43.64 |
| PGSC0003DMT400035529 | Potato | cytosol, mitochondrion, peroxisome, plastid | 48.94 | 43.4 |
| KRH12149 | Soybean | plasma membrane | 46.01 | 42.82 |
| KRH37147 | Soybean | nucleus, peroxisome, plasma membrane | 45.74 | 42.05 |
| KRH12150 | Soybean | plasma membrane | 39.89 | 41.9 |
| KRH37149 | Soybean | plasma membrane | 43.35 | 40.05 |
| GSMUA_Achr10P... | Banana | endoplasmic reticulum, plasma membrane, vacuole | 25.27 | 31.46 |
| GSMUA_Achr5P24450_001 | Banana | plasma membrane | 29.26 | 29.89 |
| GSMUA_Achr5P12690_001 | Banana | plasma membrane | 27.13 | 29.23 |
| GSMUA_Achr10P... | Banana | plasma membrane | 30.85 | 23.63 |
| GSMUA_Achr1P26440_001 | Banana | plasma membrane | 15.69 | 21.61 |
| GSMUA_Achr10P... | Banana | cytosol, extracellular, golgi | 0.8 | 2.56 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr9P06170_001 | EnsemblPlants:GSMUA_Achr9T06170_001 | EnsemblPlantsGene:GSMUA_Achr9G06170_001 | GO:GO:0003674 | GO:GO:0005215 | GO:GO:0005575 |
| GO:GO:0006810 | GO:GO:0008150 | GO:GO:0016020 | GO:GO:0016021 | InterPro:PUP_plant | PANTHER:PTHR31376 |
| PANTHER:PTHR31376:SF3 | PFAM:PF16913 | SEG:seg | SUPFAM:SSF103481 | TMHMM:TMhelix | UniParc:UPI00029553F5 |
| UniProt:M0TXX6 | MapMan:24.2.1.6 | : | : | : | : |
Description
Probable purine permease 4 [Source:GMGC_GENE;Acc:GSMUA_Achr9G06170_001]
Coordinates
chr9:-:3960170..3961300
Molecular Weight (calculated)
39867.1 Da
IEP (calculated)
6.844
GRAVY (calculated)
0.389
Length
376 amino acids
Sequence
(BLAST)
(BLAST)
001: MEKQTNHSQL DEERGRGGGD GGEDAALESR EAANHRSTSN HFLLAATYAS LILGSLSSSL LSRFYFVHGG SNRWVSTLVQ SAGFPLLLPL IYLTHSPSSR
101: PFSCFSPRLL YLSLFLGLLL GVNNLLFSCG VSYLPVSTSS LLLSSQLGFT LILSALLIRH PLTFSNLNCV VLLTLSSVLL ALNSSGDHSA GVDRGHFFLG
201: FAATLGAAGL FAVYLPVMQL VYRGVNGYRT AVEVQLLMEA SATALAAAGM VASGGWRRED AWDLGAAHYW VVVGTTAASW QLCFMGTAGM VFLTSSVHSG
301: ICMTALLPVN VLGGVLVFGD EFGGSKAVAM LLCLWGFASY LYGTRTNKEE TVMAMTGRKE TGKTEGTGGS GVDENT
101: PFSCFSPRLL YLSLFLGLLL GVNNLLFSCG VSYLPVSTSS LLLSSQLGFT LILSALLIRH PLTFSNLNCV VLLTLSSVLL ALNSSGDHSA GVDRGHFFLG
201: FAATLGAAGL FAVYLPVMQL VYRGVNGYRT AVEVQLLMEA SATALAAAGM VASGGWRRED AWDLGAAHYW VVVGTTAASW QLCFMGTAGM VFLTSSVHSG
301: ICMTALLPVN VLGGVLVFGD EFGGSKAVAM LLCLWGFASY LYGTRTNKEE TVMAMTGRKE TGKTEGTGGS GVDENT
001: MSDGRVNADP QQEENMVKPP VKRSLTLLIV TYFFLFFGSI ASSLLAKYYF VYGGSSRWVS TWVQSAGFPL LLILIYFPHY VLKTTTRRPF TRFTLRHLIF
101: SVLIGLVLGF NNFLFSWGTS YLPVSTSSLL LSTQLVFTLI LSRIIVKQKI TFSNLNCVVL LTLSSVLLAL DSSKDKPSGL TKTKYFIGYV STIGAGLLFA
201: LYLPVTEKLY RTVYCYAMVM EVQLVMEFAA TVFATIGMAC EGGFKEMVKE ANHVFTKGPT FYWTFAILAN VVTWQLSFAA TSGMVYLTSG ITGGICMTAL
301: LAMNVIGGVV AYGDVFGGVK IVSTVLCIWG FSSYTYGMYM KMKKEEKEKG EYSGVKTTED SGEMEVEMGN VKDDVAAADD RA
101: SVLIGLVLGF NNFLFSWGTS YLPVSTSSLL LSTQLVFTLI LSRIIVKQKI TFSNLNCVVL LTLSSVLLAL DSSKDKPSGL TKTKYFIGYV STIGAGLLFA
201: LYLPVTEKLY RTVYCYAMVM EVQLVMEFAA TVFATIGMAC EGGFKEMVKE ANHVFTKGPT FYWTFAILAN VVTWQLSFAA TSGMVYLTSG ITGGICMTAL
301: LAMNVIGGVV AYGDVFGGVK IVSTVLCIWG FSSYTYGMYM KMKKEEKEKG EYSGVKTTED SGEMEVEMGN VKDDVAAADD RA
Arabidopsis Description
PUP4Probable purine permease 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9SY29]
SUBAcon: [peroxisome,vacuole,plasma membrane]
SUBAcon: [peroxisome,vacuole,plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.