Skip to main content
crop-pal logo
Canola
Search for another protein from :
Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane

Predictor Summary:
  • nucleus 1
  • plasma membrane 3
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • golgi 1
  • peroxisome 1
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane
Any Predictor:nucleus, peroxisome, plasma membrane
BaCelLo:nucleus
MultiLoc:plasma membrane
PProwler:secretory
WoLF PSORT:plasma membrane
YLoc:peroxisome
PPI

Inferred distinct locusB in Crop

locusBlocations
CDX78905
CDX98596
CDX99411
CDY01565

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G30840.1 CDX78905 AT4G19030.1 21798944
AT1G30840.1 CDX98596 AT4G19030.1 21798944
AT1G30840.1 CDX99411 AT4G19030.1 21798944
AT1G30840.1 CDY01565 AT4G19030.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY09533 Canola plasma membrane 98.75 98.75
CDY02338 Canola plasma membrane 95.62 95.62
Bra023141.1-P Field mustard plasma membrane 95.31 78.01
Bra023144.1-P Field mustard endoplasmic reticulum, peroxisome, plasma membrane 95.0 77.75
AT1G30840.1 Thale cress peroxisome, plasma membrane, vacuole 80.0 67.02
VIT_18s0089g01410.t01 Wine grape plasma membrane 56.25 52.33
Solyc10g005160.1.1 Tomato plasma membrane 54.06 48.46
Solyc10g005150.1.1 Tomato plasma membrane 54.69 45.81
Solyc10g005170.1.1 Tomato cytosol, peroxisome, plasma membrane 55.0 44.22
KRH12150 Soybean plasma membrane 48.12 43.02
KRH37148 Soybean cytosol, peroxisome, plasma membrane 53.75 42.89
GSMUA_Achr6P30590_001 Banana endoplasmic reticulum, peroxisome, plasma membrane 45.0 41.86
KRH37147 Soybean nucleus, peroxisome, plasma membrane 53.12 41.56
Solyc02g082170.1.1 Tomato plasma membrane 53.12 41.36
KRH37149 Soybean plasma membrane 52.5 41.28
KRH12149 Soybean plasma membrane 51.88 41.09
PGSC0003DMT400035529 Potato cytosol, mitochondrion, peroxisome, plastid 54.38 41.04
GSMUA_Achr9P06170_001 Banana cytosol 45.94 39.1
TraesCS3B01G300900.1 Wheat plastid 46.25 38.95
TraesCS3A01G267500.1 Wheat plastid 46.56 38.9
GSMUA_Achr3P16440_001 Banana extracellular, peroxisome, plastid 45.94 38.89
TraesCS3D01G267700.1 Wheat plastid 46.25 38.64
Zm00001d038965_P001 Maize mitochondrion, plastid 43.44 37.98
EES18657 Sorghum mitochondrion 40.94 37.97
OQU78406 Sorghum plastid 43.75 37.94
EES01264 Sorghum plasma membrane 44.69 36.95
Os01t0680200-01 Rice cytosol, plasma membrane, vacuole 44.69 36.95
HORVU3Hr1G062690.1 Barley plastid 45.94 36.75
Zm00001d043858_P001 Maize vacuole 44.69 36.11
Os05t0556800-01 Rice mitochondrion 43.12 36.03
Zm00001d011603_P001 Maize endoplasmic reticulum, plasma membrane, plastid, vacuole 43.12 35.84
TraesCS1A01G386000.1 Wheat plastid 40.31 34.31
GSMUA_Achr8P27440_001 Banana mitochondrion 45.0 34.04
Os01t0504100-01 Rice plasma membrane 40.31 34.04
TraesCS1B01G413400.1 Wheat plastid 40.31 34.04
TraesCS1D01G394000.1 Wheat plastid 40.0 33.77
TraesCS1D01G393900.1 Wheat plastid 41.56 33.76
HORVU1Hr1G085120.1 Barley plastid 42.19 33.75
TraesCS1A01G385800.1 Wheat plastid 41.88 33.17
HORVU1Hr1G085140.1 Barley endoplasmic reticulum 39.06 33.07
TraesCS1A01G386100.1 Wheat plastid 40.94 32.43
TraesCS1B01G413500.1 Wheat plastid 40.94 32.43
TraesCS1D01G394100.1 Wheat plastid 40.62 32.18
HORVU1Hr1G085230.1 Barley mitochondrion 40.31 31.7
TraesCS1B01G413300.1 Wheat mitochondrion 41.56 31.52
CDY72169 Canola plasma membrane 24.69 31.23
HORVU1Hr1G085150.1 Barley plastid 40.62 30.66
CDX90136 Canola plasma membrane 32.81 29.83
PGSC0003DMT400086024 Potato cytosol, endoplasmic reticulum, extracellular 13.12 29.79
CDY35722 Canola plasma membrane 32.5 29.38
CDY17197 Canola extracellular, plasma membrane 30.94 28.21
CDY27947 Canola plasma membrane 29.69 27.22
CDY12422 Canola plasma membrane 31.88 27.13
CDY29741 Canola plasma membrane 31.88 27.06
PGSC0003DMT400090938 Potato endoplasmic reticulum, extracellular 13.44 27.04
CDY16284 Canola plasma membrane 31.56 26.79
PGSC0003DMT400090756 Potato endoplasmic reticulum, extracellular, vacuole 11.88 26.39
CDY08900 Canola plasma membrane 25.31 26.05
CDX94595 Canola plasma membrane 28.12 25.79
CDX90135 Canola plasma membrane 25.94 25.7
CDX94594 Canola extracellular, plasma membrane 27.81 25.5
CDY12545 Canola plasma membrane 23.12 24.83
CDY15687 Canola plasma membrane 23.12 24.42
CDY35721 Canola plasma membrane 24.06 24.14
CDY36342 Canola endoplasmic reticulum, plasma membrane, vacuole 21.88 23.41
CDY46618 Canola plasma membrane 16.56 23.35
CDX78835 Canola plasma membrane 28.44 23.27
CDX76536 Canola plasma membrane 21.25 23.21
CDX99493 Canola plasma membrane 28.12 22.96
CDY01525 Canola plasma membrane 25.31 21.43
CDX71327 Canola plasma membrane 27.81 21.39
CDY14989 Canola plasma membrane 27.5 21.2
CDY34789 Canola cytosol, peroxisome, plasma membrane 25.0 21.11
CDX76537 Canola plasma membrane 25.62 21.03
CDX76826 Canola cytosol, peroxisome, plasma membrane 24.69 20.84
CDX90414 Canola plasma membrane 24.38 20.8
CDY08895 Canola plasma membrane 25.62 20.76
CDX76538 Canola plasma membrane 25.31 20.66
CDX76540 Canola plasma membrane 25.62 20.65
CDY08899 Canola cytosol, peroxisome, plasma membrane 25.0 20.51
CDY08897 Canola plasma membrane 25.0 20.46
CDY54350 Canola plasma membrane 20.31 19.58
CDX75141 Canola plasma membrane 19.69 18.98
CDX78833 Canola cytosol, extracellular, plasma membrane 26.88 17.88
CDX99494 Canola plasma membrane 27.5 17.15
CDY22619 Canola plasma membrane 19.38 16.45
CDY67986 Canola plasma membrane 18.75 16.09
CDY53149 Canola plasma membrane 19.38 15.78
CDY29401 Canola plasma membrane 16.25 15.12
CDY64442 Canola plasma membrane 18.12 14.83
CDX93469 Canola plasma membrane 17.5 14.51
CDX94937 Canola plasma membrane 16.88 14.25
CDY29404 Canola plasma membrane 16.88 14.17
CDY31805 Canola plasma membrane 19.38 14.0
CDY39353 Canola plasma membrane 16.56 13.87
CDY63252 Canola extracellular 18.12 13.43
CDY39352 Canola plasma membrane 15.94 13.08
CDY29403 Canola plasma membrane 15.62 12.99
CDX73177 Canola plasma membrane 16.25 12.29
CDX96651 Canola plasma membrane 16.25 12.29
CDY63702 Canola plasma membrane 18.12 7.56
GSMUA_Achr10P... Banana cytosol, extracellular, golgi 0.94 2.56
CDX96650 Canola cytosol, plasma membrane, vacuole 0.31 0.64
Protein Annotations
MapMan:24.2.1.6GO:A0A078F907UniProt:A0A078F907EnsemblPlants:CDY09527ProteinID:CDY09527ProteinID:CDY09527.1
GO:GO:0003674GO:GO:0005215GO:GO:0005575GO:GO:0006810GO:GO:0008150GO:GO:0016020
GO:GO:0016021EnsemblPlantsGene:GSBRNA2T00031111001InterPro:MFS_trans_sfPFAM:PF16913PANTHER:PTHR31376PANTHER:PTHR31376:SF3
InterPro:PUP_plantSUPFAM:SSF103473SUPFAM:SSF103481TMHMM:TMhelixUniParc:UPI0004EEA4E2SEG:seg
Description
BnaC05g23920DBnaC05g23920D protein [Source:UniProtKB/TrEMBL;Acc:A0A078F907]
Coordinates
chrLK031997:-:115782..116957
Molecular Weight (calculated)
35586.6 Da
IEP (calculated)
6.673
GRAVY (calculated)
0.378
Length
320 amino acids
Sequence
(BLAST)
001: MSDVRVNADQ QEEGEQQQNL VKAPVKRSLG LLITTYGCLF VGSIASSLLA KYYFVHGGSS RWVSTWVQSA GFPLLLGLIY FPHFVFKTTK RRPFTRFTHR
101: HLLFSVVIGL ILGFNNFLFS WGTSYLPVST SSLLLSTQLI FTLILSVIIV KQKVTFSNLN CVVLLTLSSV LLALGSSQDK PAGLTKTKYF IGFLSTIGAG
201: LLFALYLPVT ERVYRSVYCF AMVMEMQLVM EFSATVFATI GVVMYGDAFG GVKIVSTVLC IWGFSSYVYG IYVKMKKDEE KEEEEEEEGH TGMKTVEDGG
301: ELELEMGMIK DDVAAADERV
Best Arabidopsis Sequence Match ( AT1G30840.1 )
(BLAST)
001: MSDGRVNADP QQEENMVKPP VKRSLTLLIV TYFFLFFGSI ASSLLAKYYF VYGGSSRWVS TWVQSAGFPL LLILIYFPHY VLKTTTRRPF TRFTLRHLIF
101: SVLIGLVLGF NNFLFSWGTS YLPVSTSSLL LSTQLVFTLI LSRIIVKQKI TFSNLNCVVL LTLSSVLLAL DSSKDKPSGL TKTKYFIGYV STIGAGLLFA
201: LYLPVTEKLY RTVYCYAMVM EVQLVMEFAA TVFATIGMAC EGGFKEMVKE ANHVFTKGPT FYWTFAILAN VVTWQLSFAA TSGMVYLTSG ITGGICMTAL
301: LAMNVIGGVV AYGDVFGGVK IVSTVLCIWG FSSYTYGMYM KMKKEEKEKG EYSGVKTTED SGEMEVEMGN VKDDVAAADD RA
Arabidopsis Description
PUP4Probable purine permease 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9SY29]
SUBAcon: [peroxisome,vacuole,plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.