Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, cytosol, plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 2
- golgi 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra012567.1-P | Field mustard | cytosol, peroxisome, plasma membrane | 99.33 | 99.33 |
| CDX98596 | Canola | cytosol, peroxisome, plasma membrane | 98.99 | 98.99 |
| CDX78905 | Canola | cytosol, peroxisome, plasma membrane | 92.95 | 93.27 |
| CDX99411 | Canola | cytosol, peroxisome, plasma membrane | 91.28 | 91.58 |
| AT4G18910.1 | Thale cress | golgi, peroxisome, vacuole | 88.59 | 89.8 |
| AT4G19030.1 | Thale cress | plasma membrane | 79.87 | 80.41 |
| KRH42926 | Soybean | plasma membrane | 66.11 | 71.9 |
| VIT_10s0003g01830.t01 | Wine grape | cytosol, peroxisome, plasma membrane, plastid | 67.45 | 71.28 |
| KRH59036 | Soybean | plasma membrane | 64.43 | 71.11 |
| KRH11076 | Soybean | cytosol | 65.1 | 71.06 |
| KRH21197 | Soybean | cytosol, peroxisome, plasma membrane | 64.77 | 70.7 |
| KRH59035 | Soybean | plasma membrane | 63.42 | 69.74 |
| PGSC0003DMT400071510 | Potato | plasma membrane | 63.76 | 68.59 |
| Solyc03g005980.2.1 | Tomato | plasma membrane | 63.42 | 68.23 |
| KRH42923 | Soybean | extracellular | 60.4 | 66.42 |
| Solyc02g071920.2.1 | Tomato | plasma membrane | 64.09 | 65.86 |
| PGSC0003DMT400073246 | Potato | plasma membrane | 64.09 | 65.86 |
| KRH45251 | Soybean | extracellular | 18.12 | 59.34 |
| CDY71538 | Canola | extracellular, plasma membrane, vacuole | 45.3 | 59.21 |
| CDX99689 | Canola | extracellular | 32.21 | 56.8 |
| CDX84320 | Canola | extracellular, plasma membrane, plastid, vacuole | 52.01 | 54.2 |
| CDY17241 | Canola | cytosol, plasma membrane, plastid, vacuole | 52.01 | 54.2 |
| CDY17243 | Canola | extracellular, plasma membrane, plastid, vacuole | 52.01 | 54.2 |
| CDX84321 | Canola | endoplasmic reticulum, plasma membrane, plastid, vacuole | 51.68 | 53.85 |
| CDX99688 | Canola | plasma membrane | 50.67 | 53.36 |
| CDY65403 | Canola | plasma membrane | 50.67 | 53.36 |
| CDX74558 | Canola | plasma membrane | 48.99 | 51.59 |
| CDY01700 | Canola | plasma membrane | 48.99 | 51.59 |
| CDY72002 | Canola | plastid | 14.43 | 50.59 |
| CDY35532 | Canola | endoplasmic reticulum, extracellular, vacuole | 44.63 | 47.33 |
| CDY41749 | Canola | plasma membrane | 46.98 | 47.3 |
| CDY16269 | Canola | plastid | 11.07 | 45.83 |
| CDY51581 | Canola | plastid | 11.07 | 45.83 |
| CDX84114 | Canola | plasma membrane | 48.32 | 43.11 |
| CDY69767 | Canola | plasma membrane | 35.57 | 39.7 |
| CDX87340 | Canola | cytosol, peroxisome, plasma membrane | 40.6 | 39.67 |
| CDY39946 | Canola | cytosol, peroxisome, plasma membrane | 40.6 | 39.67 |
| CDY66949 | Canola | cytosol, peroxisome, plasma membrane | 40.27 | 39.34 |
| CDY53224 | Canola | cytosol, peroxisome, plasma membrane | 40.27 | 39.34 |
| CDY35531 | Canola | vacuole | 40.94 | 38.98 |
| CDY29921 | Canola | vacuole | 40.94 | 38.73 |
| CDX67591 | Canola | plasma membrane | 38.59 | 38.21 |
| CDY25253 | Canola | plasma membrane | 38.26 | 37.87 |
| CDX94261 | Canola | plasma membrane | 38.26 | 37.87 |
| CDY05100 | Canola | plasma membrane | 37.92 | 37.54 |
| CDX90757 | Canola | plasma membrane | 37.92 | 37.54 |
| CDY29922 | Canola | peroxisome, plasma membrane, vacuole | 40.94 | 37.2 |
| CDY35528 | Canola | cytosol | 16.44 | 36.3 |
| HORVU7Hr1G088900.1 | Barley | cytosol, golgi, plasma membrane | 24.16 | 34.12 |
| CDY27709 | Canola | plasma membrane | 28.86 | 31.62 |
| CDY05231 | Canola | plasma membrane | 28.86 | 31.62 |
| GSMUA_Achr4P10230_001 | Banana | plastid | 19.46 | 18.47 |
Protein Annotations
| Gene3D:1.20.1080.10 | MapMan:24.3.1.1 | GO:A0A078EHN1 | InterPro:Aquaporin-like | InterPro:Aquaporin_transptr | EnsemblPlants:CDY01565 |
| ProteinID:CDY01565 | ProteinID:CDY01565.1 | GO:GO:0003674 | GO:GO:0005215 | GO:GO:0005575 | GO:GO:0006810 |
| GO:GO:0008150 | GO:GO:0015267 | GO:GO:0016020 | GO:GO:0055085 | EnsemblPlantsGene:GSBRNA2T00112605001 | InterPro:IPR023271 |
| InterPro:MIP | InterPro:MIP_CS | PFAM:PF00230 | PRINTS:PR00783 | ScanProsite:PS00221 | PANTHER:PTHR19139 |
| PANTHER:PTHR19139:SF189 | SUPFAM:SSF81338 | TIGRFAMs:TIGR00861 | TMHMM:TMhelix | UniParc:UPI0004EF4C7B | : |
Description
BnaC07g35550D
Coordinates
chrLK031927:+:690570..693416
Molecular Weight (calculated)
31666.7 Da
IEP (calculated)
8.849
GRAVY (calculated)
0.422
Length
298 amino acids
Sequence
(BLAST)
(BLAST)
001: MAEISGNGHG DSKEGAVMVN INQEVELQQQ QKEAIHTTKS MKKQDSVLSF SVPFLQKLMA EILGTYFLIF AGCASVAVNA QHDKAVTLPG IAIVWGLTVM
101: VLVYSLGHIS GAHFNPAVTI AFASCGRFPL KQVPAYVISQ VIGSTLAAAT LRLLFGLDQN VCSGKHDVFV GTLPSGSDLQ SFVIEFIITF YLMFIISGVA
201: TDNRAIGELA GLAVGSTVLL NVIIAGPVSG ASMNPGRSLG PAMVYNCYKG IWIYIASPIL GAVAGAWVYN TVRYTDKPLR EITKSGSFLK SARNGSSR
101: VLVYSLGHIS GAHFNPAVTI AFASCGRFPL KQVPAYVISQ VIGSTLAAAT LRLLFGLDQN VCSGKHDVFV GTLPSGSDLQ SFVIEFIITF YLMFIISGVA
201: TDNRAIGELA GLAVGSTVLL NVIIAGPVSG ASMNPGRSLG PAMVYNCYKG IWIYIASPIL GAVAGAWVYN TVRYTDKPLR EITKSGSFLK SARNGSSR
001: MAEISGNGGD ARDGAVVVNL KEEDEQQQQQ QAIHKPLKKQ DSLLSISVPF LQKLMAEVLG TYFLIFAGCA AVAVNTQHDK AVTLPGIAIV WGLTVMVLVY
101: SLGHISGAHF NPAVTIAFAS CGRFPLKQVP AYVISQVIGS TLAAATLRLL FGLDQDVCSG KHDVFVGTLP SGSNLQSFVI EFIITFYLMF VISGVATDNR
201: AIGELAGLAV GSTVLLNVII AGPVSGASMN PGRSLGPAMV YSCYRGLWIY IVSPIVGAVS GAWVYNMVRY TDKPLREITK SGSFLKTVRN GSSR
101: SLGHISGAHF NPAVTIAFAS CGRFPLKQVP AYVISQVIGS TLAAATLRLL FGLDQDVCSG KHDVFVGTLP SGSNLQSFVI EFIITFYLMF VISGVATDNR
201: AIGELAGLAV GSTVLLNVII AGPVSGASMN PGRSLGPAMV YSCYRGLWIY IVSPIVGAVS GAWVYNMVRY TDKPLREITK SGSFLKTVRN GSSR
Arabidopsis Description
NIP1-2Aquaporin NIP1-2 [Source:UniProtKB/Swiss-Prot;Acc:Q8LFP7]
SUBAcon: [peroxisome,golgi,vacuole]
SUBAcon: [peroxisome,golgi,vacuole]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.