Subcellular Localization
min:
: max
Winner_takes_all: plastid, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- mitochondrion 2
- cytosol 2
- plastid 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY08492 | Canola | cytosol | 99.1 | 97.94 |
| CDY70958 | Canola | cytosol | 90.75 | 91.29 |
| CDX73851 | Canola | cytosol | 90.75 | 91.02 |
| AT3G11820.1 | Thale cress | cytosol, nucleus, plastid | 90.15 | 87.28 |
| KRH32861 | Soybean | mitochondrion | 72.54 | 73.19 |
| Solyc01g006950.2.1 | Tomato | nucleus | 64.18 | 71.67 |
| PGSC0003DMT400072325 | Potato | cytosol | 64.48 | 71.52 |
| KRH72169 | Soybean | cytosol | 71.34 | 71.34 |
| Solyc10g081850.1.1 | Tomato | cytosol | 64.48 | 71.29 |
| PGSC0003DMT400054965 | Potato | cytosol | 63.28 | 70.67 |
| VIT_08s0032g01150.t01 | Wine grape | cytosol | 67.16 | 69.44 |
| CDY23212 | Canola | cytosol | 67.46 | 65.89 |
| GSMUA_Achr6P31140_001 | Banana | cytosol | 53.73 | 65.69 |
| CDX90604 | Canola | cytosol, golgi, nucleus | 64.18 | 64.37 |
| CDY29079 | Canola | cytosol, golgi, nucleus | 64.48 | 64.29 |
| CDX95336 | Canola | cytosol | 20.0 | 63.81 |
| CDY34843 | Canola | cytosol | 54.33 | 61.07 |
| CDY34656 | Canola | cytosol | 54.03 | 60.74 |
| CDY20986 | Canola | cytosol | 53.43 | 60.07 |
| CDX97943 | Canola | cytosol | 53.43 | 60.07 |
| CDY70107 | Canola | cytosol | 53.43 | 60.07 |
| CDY19350 | Canola | cytosol | 53.13 | 59.73 |
| EER93336 | Sorghum | cytosol | 54.03 | 58.96 |
| Zm00001d034365_P001 | Maize | plasma membrane | 53.43 | 58.5 |
| Os03t0787000-01 | Rice | plasma membrane | 57.61 | 58.48 |
| GSMUA_Achr8P03020_001 | Banana | cytosol | 53.13 | 57.23 |
| CDY21958 | Canola | cytosol | 51.94 | 57.05 |
| TraesCS5A01G425600.1 | Wheat | cytosol, nucleus, plastid | 53.73 | 56.78 |
| CDY48554 | Canola | cytosol | 51.64 | 56.72 |
| TraesCS5B01G427600.1 | Wheat | cytosol, golgi, nucleus | 53.73 | 56.25 |
| TraesCSU01G076400.1 | Wheat | cytosol, golgi, nucleus | 53.73 | 56.07 |
| CDY21160 | Canola | cytosol | 22.09 | 55.64 |
| CDY51747 | Canola | cytosol | 21.49 | 53.33 |
| CDY50666 | Canola | cytosol | 21.19 | 52.59 |
| HORVU5Hr1G103590.1 | Barley | cytosol, mitochondrion | 39.7 | 52.16 |
| CDY29963 | Canola | cytosol | 42.09 | 45.48 |
| CDX97497 | Canola | cytosol | 39.1 | 43.23 |
| CDX93553 | Canola | cytosol | 39.4 | 43.0 |
| CDY31137 | Canola | cytosol | 38.81 | 42.76 |
| CDX95050 | Canola | cytosol | 39.1 | 42.67 |
| Zm00001d013114_P001 | Maize | cytosol, plastid | 36.42 | 41.78 |
| Zm00001d013115_P001 | Maize | cytosol | 18.21 | 41.78 |
| CDY25157 | Canola | cytosol | 23.88 | 39.6 |
| CDY51748 | Canola | cytosol | 20.6 | 38.98 |
| CDY50665 | Canola | cytosol | 19.7 | 37.93 |
| CDY21161 | Canola | cytosol | 19.7 | 36.87 |
| CDY46302 | Canola | cytosol | 30.75 | 35.76 |
| CDY20921 | Canola | cytosol | 29.85 | 34.97 |
| CDY29223 | Canola | cytosol | 29.85 | 34.84 |
| HORVU5Hr1G103620.1 | Barley | cytosol | 13.73 | 29.68 |
Protein Annotations
| Gene3D:1.20.5.110 | Gene3D:1.20.58.70 | MapMan:22.7.1.1 | GO:A0A078EIY5 | EnsemblPlants:CDY01061 | ProteinID:CDY01061 |
| ProteinID:CDY01061.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0005484 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0006810 | GO:GO:0006886 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0016020 |
| GO:GO:0016043 | GO:GO:0016192 | GO:GO:0061025 | EnsemblPlantsGene:GSBRNA2T00111101001 | InterPro:IPR000727 | PFAM:PF00804 |
| PFAM:PF05739 | ScanProsite:PS00914 | PFscan:PS50192 | PANTHER:PTHR19957 | PANTHER:PTHR19957:SF69 | SMART:SM00397 |
| SMART:SM00503 | InterPro:SNARE | SUPFAM:SSF47661 | InterPro:Syntaxin/epimorphin_CS | InterPro:Syntaxin_N | TMHMM:TMhelix |
| InterPro:T_SNARE_dom | UniParc:UPI0004EBDD27 | SEG:seg | : | : | : |
Description
BnaC05g41390D
Coordinates
chrLK031923:-:953702..957576
Molecular Weight (calculated)
37011.1 Da
IEP (calculated)
9.765
GRAVY (calculated)
-0.544
Length
335 amino acids
Sequence
(BLAST)
(BLAST)
001: MNDLFSSSFT RFRSSGAPSP QGTGVQMAHP AGVNLDKFFE DVESVKEELK ELDRVNDTLQ SSHEQSKTLP NAQAVKDLRS KMDGDVGVAL KKAKMIKVKL
101: EALDRSNAAN RSLPGCGPGS SSDRTRTSLL NGLRKKLKDS MDSFNRLREL ISSEYRETVQ RRYFTVTGEN PDEKTLDRLI STGESERFLQ KAIQEQGRGR
201: VLDTINEIQE RHDAVKDIEK NLKELHQVFL DMAVLVEHQG AQLDDIESHV GRASSFIRGG TEQLHTARVY QKNTRKWTCY AIIILIIIIV VVVLAVVKPW
301: QTNGGGGGGG GGGSPPAQGQ VPPPSPPQAR RLLLR
101: EALDRSNAAN RSLPGCGPGS SSDRTRTSLL NGLRKKLKDS MDSFNRLREL ISSEYRETVQ RRYFTVTGEN PDEKTLDRLI STGESERFLQ KAIQEQGRGR
201: VLDTINEIQE RHDAVKDIEK NLKELHQVFL DMAVLVEHQG AQLDDIESHV GRASSFIRGG TEQLHTARVY QKNTRKWTCY AIIILIIIIV VVVLAVVKPW
301: QTNGGGGGGG GGGSPPAQGQ VPPPSPPQAR RLLLR
001: MNDLFSSSFS RFRSGEPSPR RDVAGGGDGV QMANPAGSTG GVNLDKFFED VESVKEELKE LDRLNETLSS CHEQSKTLHN AKAVKDLRSK MDGDVGVALK
101: KAKMIKVKLE ALDRANAANR SLPGCGPGSS SDRTRTSVLN GLRKKLMDSM DSFNRLRELI SSEYRETVQR RYFTVTGENP DERTLDRLIS TGESERFLQK
201: AIQEQGRGRV LDTINEIQER HDAVKDIEKN LRELHQVFLD MAVLVEHQGA QLDDIESHVG RASSFIRGGT DQLQTARVYQ KNTRKWTCIA IIILIIIITV
301: VVLAVLKPWN NSSGGGGGGG GGGTTGGSQP NSGTPPNPPQ ARRLLR
101: KAKMIKVKLE ALDRANAANR SLPGCGPGSS SDRTRTSVLN GLRKKLMDSM DSFNRLRELI SSEYRETVQR RYFTVTGENP DERTLDRLIS TGESERFLQK
201: AIQEQGRGRV LDTINEIQER HDAVKDIEKN LRELHQVFLD MAVLVEHQGA QLDDIESHVG RASSFIRGGT DQLQTARVYQ KNTRKWTCIA IIILIIIITV
301: VVLAVLKPWN NSSGGGGGGG GGGTTGGSQP NSGTPPNPPQ ARRLLR
Arabidopsis Description
SYP121SYR1 [Source:UniProtKB/TrEMBL;Acc:A0A178VIM4]
SUBAcon: [plastid,nucleus,cytosol]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.