Subcellular Localization
min:
: max
Winner_takes_all: plastid, cytosol
Predictor Summary:
Predictor Summary:
- plastid 3
- mitochondrion 2
- cytosol 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d013115_P001 | Maize | cytosol | 31.85 | 63.7 |
| Zm00001d034365_P001 | Maize | plasma membrane | 64.38 | 61.44 |
| EER93336 | Sorghum | cytosol | 63.01 | 59.93 |
| TraesCS5A01G425600.1 | Wheat | cytosol, nucleus, plastid | 60.62 | 55.84 |
| TraesCSU01G076400.1 | Wheat | cytosol, golgi, nucleus | 60.96 | 55.45 |
| TraesCS5B01G427600.1 | Wheat | cytosol, golgi, nucleus | 60.62 | 55.31 |
| Os03t0787000-01 | Rice | plasma membrane | 61.64 | 54.55 |
| GSMUA_Achr6P31140_001 | Banana | cytosol | 49.32 | 52.55 |
| GSMUA_Achr8P03020_001 | Banana | cytosol | 50.34 | 47.27 |
| HORVU5Hr1G103590.1 | Barley | cytosol, mitochondrion | 40.41 | 46.27 |
| HORVU5Hr1G103620.1 | Barley | cytosol | 22.95 | 43.23 |
| VIT_08s0032g01150.t01 | Wine grape | cytosol | 45.89 | 41.36 |
| Solyc10g081850.1.1 | Tomato | cytosol | 42.81 | 41.25 |
| PGSC0003DMT400072325 | Potato | cytosol | 42.47 | 41.06 |
| Solyc01g006950.2.1 | Tomato | nucleus | 42.12 | 41.0 |
| PGSC0003DMT400054965 | Potato | cytosol | 41.78 | 40.67 |
| KRH72168 | Soybean | cytosol | 41.1 | 39.34 |
| CDY70958 | Canola | cytosol | 44.86 | 39.34 |
| Bra001422.1-P | Field mustard | cytosol | 44.86 | 39.34 |
| CDX73851 | Canola | cytosol | 44.86 | 39.22 |
| KRH32862 | Soybean | cytosol | 41.1 | 39.22 |
| Zm00001d053607_P001 | Maize | cytosol | 41.78 | 38.98 |
| KRH68016 | Soybean | cytosol | 38.7 | 38.44 |
| KRH72169 | Soybean | cytosol | 43.49 | 37.91 |
| KRH32861 | Soybean | mitochondrion | 42.81 | 37.65 |
| KRG96271 | Soybean | cytosol, golgi, mitochondrion | 38.7 | 37.54 |
| AT3G11820.1 | Thale cress | cytosol, nucleus, plastid | 43.84 | 36.99 |
| Bra034808.1-P | Field mustard | cytosol, nucleus, plastid | 40.75 | 36.62 |
| Zm00001d046482_P001 | Maize | cytosol | 38.7 | 36.57 |
| CDY01061 | Canola | cytosol, plastid | 41.78 | 36.42 |
| Zm00001d036931_P001 | Maize | cytosol | 38.36 | 36.25 |
| CDY08492 | Canola | cytosol | 41.44 | 35.69 |
| CDX95336 | Canola | cytosol | 12.33 | 34.29 |
| CDY23212 | Canola | cytosol | 38.36 | 32.65 |
| AT3G52400.1 | Thale cress | cytosol | 38.01 | 32.55 |
| Bra033436.1-P | Field mustard | cytosol | 38.01 | 32.46 |
| Zm00001d013323_P001 | Maize | cytosol | 33.9 | 31.53 |
| Bra012806.1-P | Field mustard | cytosol, nucleus, peroxisome | 33.22 | 31.49 |
| CDY29079 | Canola | cytosol, golgi, nucleus | 35.96 | 31.25 |
| CDX90604 | Canola | cytosol, golgi, nucleus | 35.62 | 31.14 |
| Zm00001d033919_P001 | Maize | plasma membrane | 32.88 | 30.67 |
| Zm00001d041716_P002 | Maize | cytosol | 32.88 | 30.28 |
| Zm00001d007902_P001 | Maize | mitochondrion, plasma membrane | 30.14 | 28.95 |
| Zm00001d021664_P001 | Maize | cytosol | 31.85 | 26.12 |
| Zm00001d035331_P001 | Maize | cytosol | 25.34 | 24.83 |
| Zm00001d018867_P002 | Maize | plastid | 30.82 | 23.02 |
Protein Annotations
| Gene3D:1.20.5.110 | MapMan:22.7.1.1 | UniProt:A0A1D6GG21 | ProteinID:AQK62501.1 | ncoils:Coil | GO:GO:0003674 |
| GO:GO:0005484 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0006810 | GO:GO:0006886 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016043 |
| GO:GO:0016192 | GO:GO:0061025 | InterPro:IPR000727 | PFAM:PF00804 | PFAM:PF05739 | ScanProsite:PS00914 |
| PFscan:PS50192 | PANTHER:PTHR19957 | PANTHER:PTHR19957:SF69 | SMART:SM00397 | InterPro:SNARE | SUPFAM:SSF47661 |
| InterPro:Syntaxin/epimorphin_CS | InterPro:Syntaxin_N | InterPro:T_SNARE_dom | UniParc:UPI0008438DA1 | EnsemblPlantsGene:Zm00001d013114 | EnsemblPlants:Zm00001d013114_P001 |
| EnsemblPlants:Zm00001d013114_T001 | SEG:seg | : | : | : | : |
Description
Syntaxin-121
Coordinates
chr5:-:4879308..4880263
Molecular Weight (calculated)
31504.7 Da
IEP (calculated)
10.787
GRAVY (calculated)
-0.349
Length
292 amino acids
Sequence
(BLAST)
(BLAST)
001: MNSLFSSSWK RGVGDGGEQG TSSPAAWRCL RRRVPERGRA STGSDVDVTR TGPGTLTVES IKEELRDLER IQRSLHDANV GGKSLHDAAA VRGLRARMDA
101: DVGTTIKKAK VVKLRLESLD RANAANRSVP GCVLLVATVP VVYEYRDTLA RRYFTVTGSQ HDETMAGRAG GVRGGGAVPA ARHRGGAGAR GGLGRVVAEI
201: QERHGAVAEL ERGLLELQQV FNDMAVLVAA QGEQLDDIEG NVGPARSFVD RGREQLQVAR KHQKSTRKWT CIVILFAIVL PIVLKNVNSN KN
101: DVGTTIKKAK VVKLRLESLD RANAANRSVP GCVLLVATVP VVYEYRDTLA RRYFTVTGSQ HDETMAGRAG GVRGGGAVPA ARHRGGAGAR GGLGRVVAEI
201: QERHGAVAEL ERGLLELQQV FNDMAVLVAA QGEQLDDIEG NVGPARSFVD RGREQLQVAR KHQKSTRKWT CIVILFAIVL PIVLKNVNSN KN
001: MNDLFSNSFK KNQAQLGDVE AGQETMNLDK FFEDVENVKD DMKGVEALYK KLQDSNEECK TVHNAKKVKE LRAKMDGDVA MVLKRVKIIK QKLEALEKAN
101: ANSRNVPGCG PGSSTDRTRS SVVSGLGKKL KDLMDSFQGL RARMNNEYKE TVERRYFTIT GEKADEQTID NLIASGESEN FLQKAIQEQG RGQILDTISE
201: IQERHDAVKE IEKNLLELHQ VFLDMAALVE AQGQQLNNIE SHVAKASSFV RRGTDQLQDA REYQKSSRKW TCYAIILFIV IFILLLIPLL PHIMLMLK
101: ANSRNVPGCG PGSSTDRTRS SVVSGLGKKL KDLMDSFQGL RARMNNEYKE TVERRYFTIT GEKADEQTID NLIASGESEN FLQKAIQEQG RGQILDTISE
201: IQERHDAVKE IEKNLLELHQ VFLDMAALVE AQGQQLNNIE SHVAKASSFV RRGTDQLQDA REYQKSSRKW TCYAIILFIV IFILLLIPLL PHIMLMLK
Arabidopsis Description
SYP125Syntaxin-125 [Source:UniProtKB/Swiss-Prot;Acc:Q9SXB0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.