Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- endoplasmic reticulum 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
plasma membrane:
27341663
|
msms PMID:
27341663
doi
Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d013323_P001 | Maize | cytosol | 97.12 | 96.82 |
| KXG37622 | Sorghum | cytosol | 96.49 | 96.79 |
| Os03t0736500-01 | Rice | cytosol, plasma membrane | 86.58 | 87.14 |
| TraesCS4A01G247700.1 | Wheat | cytosol | 82.11 | 81.33 |
| TraesCS4D01G066100.1 | Wheat | cytosol | 81.79 | 81.01 |
| TraesCS4B01G067200.1 | Wheat | cytosol | 81.15 | 80.89 |
| TraesCS4B01G067100.1 | Wheat | cytosol | 41.85 | 80.37 |
| HORVU4Hr1G011180.2 | Barley | cytosol | 80.83 | 69.7 |
| GSMUA_Achr1P25170_001 | Banana | cytosol | 53.99 | 68.98 |
| Solyc06g053760.2.1 | Tomato | cytosol | 63.58 | 63.99 |
| PGSC0003DMT400041982 | Potato | cytosol | 63.26 | 63.67 |
| VIT_04s0008g02770.t01 | Wine grape | cytosol | 63.26 | 63.67 |
| KRH08461 | Soybean | cytosol | 65.5 | 63.66 |
| KRH70119 | Soybean | cytosol | 63.9 | 62.89 |
| CDX95050 | Canola | cytosol | 58.79 | 59.93 |
| CDX93553 | Canola | cytosol | 58.79 | 59.93 |
| CDX97497 | Canola | cytosol | 57.83 | 59.74 |
| Bra018615.1-P | Field mustard | cytosol | 58.47 | 59.61 |
| Bra030733.1-P | Field mustard | cytosol | 57.83 | 59.54 |
| CDY31137 | Canola | cytosol | 57.51 | 59.21 |
| AT1G08560.1 | Thale cress | cytosol | 57.51 | 58.06 |
| Zm00001d053607_P001 | Maize | cytosol | 46.96 | 46.96 |
| Zm00001d036931_P001 | Maize | cytosol | 46.33 | 46.93 |
| Zm00001d046482_P001 | Maize | cytosol | 46.33 | 46.93 |
| Zm00001d034365_P001 | Maize | plasma membrane | 41.85 | 42.81 |
| Zm00001d007902_P001 | Maize | mitochondrion, plasma membrane | 36.1 | 37.17 |
| Zm00001d041716_P002 | Maize | cytosol | 36.42 | 35.96 |
| Zm00001d013115_P001 | Maize | cytosol | 15.65 | 33.56 |
| Zm00001d035331_P001 | Maize | cytosol | 31.95 | 33.56 |
| Zm00001d013114_P001 | Maize | cytosol, plastid | 30.67 | 32.88 |
| Zm00001d021664_P001 | Maize | cytosol | 36.1 | 31.74 |
| Zm00001d018867_P002 | Maize | plastid | 36.1 | 28.9 |
Protein Annotations
| Gene3D:1.20.5.110 | Gene3D:1.20.58.70 | MapMan:13.4.2.3.1 | MapMan:22.7.1.1 | UniProt:A0A1D6L384 | ncoils:Coil |
| GO:GO:0003674 | GO:GO:0005484 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0006810 | GO:GO:0006886 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0016020 |
| GO:GO:0016021 | GO:GO:0016043 | GO:GO:0016192 | GO:GO:0061025 | InterPro:IPR000727 | ProteinID:ONM08918.1 |
| PFAM:PF00804 | PFAM:PF05739 | ScanProsite:PS00914 | PFscan:PS50192 | PANTHER:PTHR19957 | PANTHER:PTHR19957:SF91 |
| SMART:SM00397 | SMART:SM00503 | InterPro:SNARE | SUPFAM:SSF47661 | InterPro:Syntaxin/epimorphin_CS | InterPro:Syntaxin_N |
| TMHMM:TMhelix | InterPro:T_SNARE_dom | UniParc:UPI000845223D | EnsemblPlantsGene:Zm00001d033919 | EnsemblPlants:Zm00001d033919_P001 | EnsemblPlants:Zm00001d033919_T001 |
| SEG:seg | : | : | : | : | : |
Description
Syntaxin-related protein KNOLLE
Coordinates
chr1:+:278614529..278615470
Molecular Weight (calculated)
34859.1 Da
IEP (calculated)
7.202
GRAVY (calculated)
-0.316
Length
313 amino acids
Sequence
(BLAST)
(BLAST)
001: MNDLMTKSFM SYVDLKKAAM KDLEAAGDGI ELPEAGAGGV TDERLRGFFQ EAEAVKAEMA AIRDALDRLH AANEEGKSLR QVDALRAHRG RVNADIVAVL
101: RRARDIRARL ESLDRANAAQ RRLSAGCREG TPLDRTRTAV TSGLRKKLKD LMLDFQALRQ RMMSEYKETV ERRYYTLTGE VPEEEVIERI ISDGRGEELL
201: GAAVAEHGKG AVLAAVHEIQ DRRDAAREVE RSLLELHQVF LDMAVMVETQ GEKLDDIESH VANASHYVQG GNKELGKAKE YQRSSRKCLC IGIIILLLLV
301: LLVIVPIATS LRR
101: RRARDIRARL ESLDRANAAQ RRLSAGCREG TPLDRTRTAV TSGLRKKLKD LMLDFQALRQ RMMSEYKETV ERRYYTLTGE VPEEEVIERI ISDGRGEELL
201: GAAVAEHGKG AVLAAVHEIQ DRRDAAREVE RSLLELHQVF LDMAVMVETQ GEKLDDIESH VANASHYVQG GNKELGKAKE YQRSSRKCLC IGIIILLLLV
301: LLVIVPIATS LRR
001: MNDLMTKSFM SYVDLKKAAM KDMEAGPDFD LEMASTKADK MDENLSSFLE EAEYVKAEMG LISETLARIE QYHEESKGVH KAESVKSLRN KISNEIVSGL
101: RKAKSIKSKL EEMDKANKEI KRLSGTPVYR SRTAVTNGLR KKLKEVMMEF QGLRQKMMSE YKETVERRYF TVTGEHANDE MIEKIITDNA GGEEFLTRAI
201: QEHGKGKVLE TVVEIQDRYD AAKEIEKSLL ELHQVFLDMA VMVESQGEQM DEIEHHVINA SHYVADGANE LKTAKSHQRN SRKWMCIGII VLLLIILIVV
301: IPIITSFSSS
101: RKAKSIKSKL EEMDKANKEI KRLSGTPVYR SRTAVTNGLR KKLKEVMMEF QGLRQKMMSE YKETVERRYF TVTGEHANDE MIEKIITDNA GGEEFLTRAI
201: QEHGKGKVLE TVVEIQDRYD AAKEIEKSLL ELHQVFLDMA VMVESQGEQM DEIEHHVINA SHYVADGANE LKTAKSHQRN SRKWMCIGII VLLLIILIVV
301: IPIITSFSSS
Arabidopsis Description
KNSYP111 [Source:UniProtKB/TrEMBL;Acc:A0A178WAC8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.