Factsheet for Zm00001d004839_P005

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d004841_P002	Maize	cytosol	100.0	100.0
Zm00001d003680_P003	Maize	cytosol	100.0	100.0
Zm00001d028622_P001	Maize	cytosol	99.74	99.74
KXG27825	Sorghum	cytosol	97.43	97.43
Zm00001d003683_P005	Maize	cytosol, mitochondrion, plasma membrane, plastid	100.0	97.25
TraesCS4D01G109200.1	Wheat	cytosol, golgi, unclear	94.6	94.6
TraesCS4B01G111500.1	Wheat	cytosol	94.6	94.6
Os11t0168200-01	Rice	nucleus	94.6	94.6
TraesCS4A01G208000.1	Wheat	golgi, unclear	94.09	94.09
Zm00001d002463_P001	Maize	cytosol	60.67	93.28
HORVU4Hr1G019980.1	Barley	cytosol	94.6	89.54
GSMUA_Achr11P...	Banana	cytosol, plastid	89.2	89.2
GSMUA_Achr5P01070_001	Banana	cytosol	88.69	88.69
GSMUA_Achr7P03150_001	Banana	plasma membrane	88.43	88.43
Solyc01g104590.2.1	Tomato	endoplasmic reticulum, nucleus, plastid, unclear	87.15	87.15
GSMUA_Achr5P01330_001	Banana	cytosol	86.89	86.89
VIT_18s0072g00340.t01	Wine grape	cytosol	88.43	86.65
KRG91678	Soybean	cytosol	86.38	86.38
KRH35119	Soybean	nucleus	86.12	86.12
KRH36391	Soybean	endoplasmic reticulum	85.6	85.6
AT1G61580.1	Thale cress	cytosol	85.09	84.87
Bra038589.1-P	Field mustard	cytosol	84.32	84.32
Bra031423.1-P	Field mustard	cytosol	84.32	84.32
VIT_12s0035g01020.t01	Wine grape	cytosol	81.23	84.04
AT1G43170.1	Thale cress	cytosol	83.8	83.8
CDY26350	Canola	cytosol	44.73	83.65
CDY03838	Canola	cytosol, mitochondrion	44.73	83.65
CDY15022	Canola	cytosol	44.47	83.17
CDY68012	Canola	cytosol	76.61	82.78
Bra024985.1-P	Field mustard	cytosol	73.26	82.61
Bra024986.1-P	Field mustard	cytosol	82.78	82.35
Bra035298.1-P	Field mustard	cytosol, peroxisome, plastid	82.52	82.1
CDY15023	Canola	cytosol	22.11	81.9
CDY33488	Canola	extracellular	75.06	81.34
CDY72003	Canola	cytosol	65.3	81.15
CDY33490	Canola	cytosol	65.3	81.15
CDY52305	Canola	cytosol	74.81	81.06
CDX77707	Canola	cytosol	74.81	81.06
GSMUA_AchrUn_...	Banana	cytosol	88.43	80.94
CDY02391	Canola	extracellular	74.55	80.78
Bra027986.1-P	Field mustard	cytosol	73.26	80.28
CDY12965	Canola	cytosol	74.04	80.22
CDY03839	Canola	cytosol	20.57	77.67
KRH27524	Soybean	endoplasmic reticulum, nucleus	86.12	77.37
CDY26351	Canola	cytosol	20.31	76.7
Bra027830.1-P	Field mustard	cytosol	42.93	76.61
Solyc01g103510.2.1	Tomato	endoplasmic reticulum, nucleus	85.35	74.94
CDY45154	Canola	cytosol	11.05	65.15
VIT_07s0031g02050.t01	Wine grape	cytosol	19.28	53.57
GSMUA_Achr6P19610_001	Banana	plastid	9.25	46.15
Bra000894.1-P	Field mustard	cytosol	38.82	15.12

Protein Annotations

EntrezGene:101027258	EntrezGene:103646454	EntrezGene:103647029	EntrezGene:103647030	MapMan:17.1.2.1.1	Gene3D:2.40.30.10
Gene3D:3.30.1430.10	Gene3D:4.10.960.10	UniProt:B4FFZ6	EMBL:BT036034	EMBL:BT040084	EMBL:EU953118
EMBL:EU959549	EMBL:EU962815	EMBL:EU968344	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	GO:GO:0030529
ProteinID:ONM17504.1	ProteinID:ONM17505.1	ProteinID:ONM17507.1	ProteinID:ONM17509.1	ProteinID:ONM17511.1	ProteinID:ONM17512.1
ProteinID:ONM17513.1	ProteinID:ONM17514.1	ProteinID:ONM19657.1	ProteinID:ONM19658.1	ProteinID:ONM19659.1	ProteinID:ONM19660.1
ProteinID:ONM19661.1	ProteinID:ONM19662.1	ProteinID:ONM19664.1	ProteinID:ONM19666.1	PFAM:PF00297	ScanProsite:PS00474
PANTHER:PTHR11363	PANTHER:PTHR11363:SF6	InterPro:Ribosomal_L3	InterPro:Ribosomal_L3_CS	SUPFAM:SSF50447	InterPro:Transl_B-barrel_sf
UniParc:UPI00005AE62A	EnsemblPlantsGene:Zm00001d004839	EnsemblPlants:Zm00001d004839_P005	EnsemblPlants:Zm00001d004839_T005	:	:

Description

60S ribosomal protein L3-1

Coordinates

chr2:+:143074909..143077854

Molecular Weight (calculated)

44580.7 Da

IEP (calculated)

10.781

GRAVY (calculated)

-0.652

Length

389 amino acids

Sequence
(BLAST)

001: MSHRKFEHPR HGSLGFLPRK RSSRHRGKVK SFPRDDPKKP CHLTAFLGYK AGMTHIVREV EKPGSKLHKK ETCEAVTIIE TPPLVIVGLV AYVKTPRGLR
101: TLNSVWAQHL SEEVRRRFYK NWCKSKKKAF TKYALKYEND AGKKEIQLQL EKMKKYASVI RVIAHTQIRK MKGLKQKKAH LMEIQVNGGT IADKVDYGYK
201: FFEKEVPVDA VFQKDEMIDI IGVTKGKGYE GVVTRWGVTR LPRKTHRGLR KVACIGAWHP ARVSYTVARA GQNGYHHRTE MNKKVYKIGK AGQETHDAST
301: EFDRTEKDIT PMGGFPHYGI VKGDYLMIKG CCVGPKKRVV TLRQSLLKQT SRLALEEIKL KFIDTSSKFG HGRFQTTDEK QRFFGKLKA

Best Arabidopsis Sequence Match ( AT1G43170.3 )
(BLAST)

001: MSHRKFEHPR HGSLGFLPRK RANRHRGKVK AFPKDDQTKP CKFTAFMGYK AGMTHIVREV EKPGSKLHKK ETCEAVTIIE TPAMVVVGVV AYVKTPRGLR
101: SLNTVWAQHL SEEVRRRFYK NWAKSKKKAF TGYAKQYDSE DGKKGIQAQL EKMKKYATVI RVLAHTQIRK MKGLKQKKAH MMEIQINGGT IAQKVDFAYS
201: FFEKQIPIEA VFQKDEMIDI IGVTKGKGYE GVVTRWGVTR LPRKTHRGLR KVACIGAWHP ARVSYTVARA GQNGYHHRTE LNKKIYRLGK VGTEAHTAMT
301: EYDRTEKDVT PMGGFPHYGI VKDDYLMIKG CCVGPKKRVV TLRQSLLTQT SRLALEEIKL KFIDTASIFG HGRFQTSLEK MRFYNRVTK

Arabidopsis Description

ARP160S ribosomal protein L3-1 [Source:UniProtKB/Swiss-Prot;Acc:P17094]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.