Factsheet for Zm00001d002463_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

mitochondrion 3
cytosol 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY26350	Canola	cytosol	66.8	81.25
CDY03838	Canola	cytosol, mitochondrion	66.8	81.25
CDY15022	Canola	cytosol	66.4	80.77
Bra027830.1-P	Field mustard	cytosol	52.57	61.01
Zm00001d028622_P001	Maize	cytosol	93.28	60.67
Zm00001d004841_P002	Maize	cytosol	93.28	60.67
Zm00001d004839_P005	Maize	cytosol	93.28	60.67
Zm00001d003680_P003	Maize	cytosol	93.28	60.67
EES12864	Sorghum	cytosol, plastid	92.09	59.9
Zm00001d003683_P005	Maize	cytosol, mitochondrion, plasma membrane, plastid	93.28	59.0
Bra024985.1-P	Field mustard	cytosol	77.08	56.52
VIT_12s0035g01020.t01	Wine grape	cytosol	82.61	55.59
GSMUA_Achr11P...	Banana	cytosol, plastid	85.38	55.53
Solyc01g104590.2.1	Tomato	endoplasmic reticulum, nucleus, plastid, unclear	84.19	54.76
GSMUA_Achr5P01330_001	Banana	cytosol	84.19	54.76
GSMUA_Achr5P01070_001	Banana	cytosol	84.19	54.76
KRG91678	Soybean	cytosol	83.4	54.24
GSMUA_Achr7P03150_001	Banana	plasma membrane	83.4	54.24
KRH35119	Soybean	nucleus	83.0	53.98
VIT_18s0072g00340.t01	Wine grape	cytosol	84.58	53.9
KRH36391	Soybean	endoplasmic reticulum	81.03	52.7
Bra038589.1-P	Field mustard	cytosol	80.24	52.19
VIT_07s0031g02050.t01	Wine grape	cytosol	28.85	52.14
CDY33490	Canola	cytosol	64.43	52.08
CDY72003	Canola	cytosol	64.43	52.08
AT1G61580.1	Thale cress	cytosol	80.24	52.05
Bra031423.1-P	Field mustard	cytosol	79.45	51.67
AT1G43170.1	Thale cress	cytosol	79.05	51.41
GSMUA_AchrUn_...	Banana	cytosol	84.58	50.35
Bra024986.1-P	Field mustard	cytosol	77.47	50.13
Bra035298.1-P	Field mustard	cytosol, peroxisome, plastid	76.68	49.62
KRH27524	Soybean	endoplasmic reticulum, nucleus	82.21	48.04
CDY68012	Canola	cytosol	67.59	47.5
Solyc01g103510.2.1	Tomato	endoplasmic reticulum, nucleus	81.42	46.5
CDY33488	Canola	extracellular	65.22	45.96
CDY52305	Canola	cytosol	64.82	45.68
CDX77707	Canola	cytosol	64.82	45.68
CDY12965	Canola	cytosol	64.82	45.68
CDY02391	Canola	extracellular	64.43	45.4
Bra027986.1-P	Field mustard	cytosol	62.45	44.51
CDY45154	Canola	cytosol	9.49	36.36
PGSC0003DMT400093371	Potato	cytosol	11.07	33.73
Bra000894.1-P	Field mustard	cytosol	49.01	12.41
CDY03839	Canola	cytosol	2.37	5.83
CDY26351	Canola	cytosol	2.37	5.83
CDY15023	Canola	cytosol	2.37	5.71
GSMUA_Achr6P19610_001	Banana	plastid	0.4	1.28

Protein Annotations

EntrezGene:100382258	MapMan:17.1.2.1.1	Gene3D:2.40.30.10	Gene3D:3.30.1430.10	EMBL:BT063676	UniProt:C0P5V7
GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0019538	GO:GO:0030529	ProteinID:ONM14393.1	ProteinID:ONM14403.1	ProteinID:ONM14410.1
ProteinID:ONM14413.1	ProteinID:ONM14430.1	ProteinID:ONM14435.1	ProteinID:ONM14437.1	ProteinID:ONM14443.1	ProteinID:ONM14465.1
ProteinID:ONM14469.1	ProteinID:ONM14473.1	ProteinID:ONM14475.1	ProteinID:ONM14477.1	ProteinID:ONM14481.1	ProteinID:ONM14493.1
PFAM:PF00297	ScanProsite:PS00474	PANTHER:PTHR11363	PANTHER:PTHR11363:SF6	InterPro:Ribosomal_L3	InterPro:Ribosomal_L3_CS
SUPFAM:SSF50447	InterPro:Transl_B-barrel_sf	UniParc:UPI0001948DEE	EnsemblPlantsGene:Zm00001d002463	EnsemblPlants:Zm00001d002463_P001	EnsemblPlants:Zm00001d002463_T001

Description

60S ribosomal protein L3-1

Coordinates

chr2:+:13306284..13307581

Molecular Weight (calculated)

28581.9 Da

IEP (calculated)

10.692

GRAVY (calculated)

-0.568

Length

253 amino acids

Sequence
(BLAST)

001: MPSNTTATQA RKKSSCSLRK YASVIRVIAH TQIRKMKGLK QKKAHLMEIQ VNGGTIADKV DYGYKFFEEV PVDAVFQKDE MIDIIGVTKG KGYEGVVTRW
101: GVTRLPRKTH RGLRKVACIG AWHPARVSYT VARAGQNGYH HRTEMNKKVY KIGKAGQESH DASTEFDRTE KDITPMGGFP HYGIIKGDYL MIKGCCVGPK
201: KRVVTLRQSL LKQTSRLALE EIKLKFIDTS SKFGHGRFQT TDEKQRFFGK LKA

Best Arabidopsis Sequence Match ( AT1G43170.4 )
(BLAST)

001: MVVVGVVAYV KTPRGLRSLN TVWAQHLSEE VRRRFYKNWA KSKKKAFTGY AKQYDSEDGK KGIQAQLEKM KKYATVIRVL AHTQIRKMKG LKQKKAHMME
101: IQINGGTIAQ KVDFAYSFFE KQIPIEAVFQ KDEMIDIIGV TKGKGYEGVV TRWGVTRLPR KTHRGLRKVA CIGAWHPARV SYTVARAGQN GYHHRTELNK
201: KIYRLGKVGT EAHTAMTEYD RTEKDVTPMG GFPHYGIVKD DYLMIKGCCV GPKKRVVTLR QSLLTQTSRL ALEEIKLKFI DTASIFGHGR FQTSLEKMRF
301: YNRVTK

Arabidopsis Description

ARP160S ribosomal protein L3-1 [Source:UniProtKB/Swiss-Prot;Acc:P17094]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.