Factsheet for Zm00001d003683_P005

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plasma membrane, plastid, cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion, plasma membrane, plastid
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

plastid: 22065420
plasma membrane: 23508561
mitochondrion: 27297264

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

msms PMID: 23508561 doi

Z Zhang, P Voothuluru, M Yamaguchi, RE Sharp, SC Peck

Division of Biochemistry, University of Missouri Columbia, MO, USA ; Christopher S. Bond Life Sciences Center, University of Missouri Columbia, MO, USA ; Interdisciplinary Plant Group, University of Missouri Columbia, MO, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d004841_P002	Maize	cytosol	97.25	100.0
Zm00001d004839_P005	Maize	cytosol	97.25	100.0
Zm00001d003680_P003	Maize	cytosol	97.25	100.0
Zm00001d028622_P001	Maize	cytosol	97.0	99.74
KXG27825	Sorghum	cytosol	94.75	97.43
TraesCS4D01G109200.1	Wheat	cytosol, golgi, unclear	92.0	94.6
TraesCS4B01G111500.1	Wheat	cytosol	92.0	94.6
Os11t0168200-01	Rice	nucleus	92.0	94.6
TraesCS4A01G208000.1	Wheat	golgi, unclear	91.5	94.09
Zm00001d002463_P001	Maize	cytosol	59.0	93.28
HORVU4Hr1G019980.1	Barley	cytosol	92.5	90.02
GSMUA_Achr11P...	Banana	cytosol, plastid	86.75	89.2
GSMUA_Achr5P01070_001	Banana	cytosol	86.25	88.69
GSMUA_Achr7P03150_001	Banana	plasma membrane	86.0	88.43
Solyc01g104590.2.1	Tomato	endoplasmic reticulum, nucleus, plastid, unclear	84.75	87.15
VIT_18s0072g00340.t01	Wine grape	cytosol	86.25	86.9
GSMUA_Achr5P01330_001	Banana	cytosol	84.5	86.89
KRG91678	Soybean	cytosol	84.0	86.38
KRH35119	Soybean	nucleus	83.75	86.12
KRH36391	Soybean	endoplasmic reticulum	83.25	85.6
AT1G61580.1	Thale cress	cytosol	82.75	84.87
Bra038589.1-P	Field mustard	cytosol	82.0	84.32
Bra031423.1-P	Field mustard	cytosol	82.0	84.32
VIT_12s0035g01020.t01	Wine grape	cytosol	79.0	84.04
AT1G43170.1	Thale cress	cytosol	81.5	83.8
CDY26350	Canola	cytosol	43.5	83.65
CDY03838	Canola	cytosol, mitochondrion	43.5	83.65
CDY15022	Canola	cytosol	43.25	83.17
CDY68012	Canola	cytosol	74.5	82.78
Bra024985.1-P	Field mustard	cytosol	71.25	82.61
Bra024986.1-P	Field mustard	cytosol	80.5	82.35
Bra035298.1-P	Field mustard	cytosol, peroxisome, plastid	80.25	82.1
CDY15023	Canola	cytosol	21.5	81.9
GSMUA_AchrUn_...	Banana	cytosol	86.5	81.41
CDY33488	Canola	extracellular	73.0	81.34
CDY72003	Canola	cytosol	63.5	81.15
CDY33490	Canola	cytosol	63.5	81.15
CDY52305	Canola	cytosol	72.75	81.06
CDX77707	Canola	cytosol	72.75	81.06
CDY02391	Canola	extracellular	72.5	80.78
Bra027986.1-P	Field mustard	cytosol	71.25	80.28
CDY12965	Canola	cytosol	72.0	80.22
CDY03839	Canola	cytosol	20.0	77.67
KRH27524	Soybean	endoplasmic reticulum, nucleus	84.0	77.6
CDY26351	Canola	cytosol	19.75	76.7
Bra027830.1-P	Field mustard	cytosol	41.75	76.61
Solyc01g103510.2.1	Tomato	endoplasmic reticulum, nucleus	83.25	75.17
CDY45154	Canola	cytosol	10.75	65.15
VIT_07s0031g02050.t01	Wine grape	cytosol	18.75	53.57
GSMUA_Achr6P19610_001	Banana	plastid	9.0	46.15
Bra000894.1-P	Field mustard	cytosol	38.0	15.22

Protein Annotations

EntrezGene:101027258	EntrezGene:103646454	EntrezGene:103647029	EntrezGene:103647030	MapMan:17.1.2.1.1	Gene3D:2.40.30.10
Gene3D:3.30.1430.10	Gene3D:4.10.960.10	UniProt:A0A1D6EAY0	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	GO:GO:0030529
ProteinID:ONM17515.1	PFAM:PF00297	ScanProsite:PS00474	PANTHER:PTHR11363	PANTHER:PTHR11363:SF6	InterPro:Ribosomal_L3
InterPro:Ribosomal_L3_CS	SUPFAM:SSF50447	InterPro:Transl_B-barrel_sf	UniParc:UPI0008433597	EnsemblPlantsGene:Zm00001d003683	EnsemblPlants:Zm00001d003683_P005
EnsemblPlants:Zm00001d003683_T005	:	:	:	:	:

Description

60S ribosomal protein L3-1

Coordinates

chr2:-:54203904..54206818

Molecular Weight (calculated)

45843.0 Da

IEP (calculated)

10.686

GRAVY (calculated)

-0.698

Length

400 amino acids

Sequence
(BLAST)

001: MSEGKEEEEG RMSHRKFEHP RHGSLGFLPR KRSSRHRGKV KSFPRDDPKK PCHLTAFLGY KAGMTHIVRE VEKPGSKLHK KETCEAVTII ETPPLVIVGL
101: VAYVKTPRGL RTLNSVWAQH LSEEVRRRFY KNWCKSKKKA FTKYALKYEN DAGKKEIQLQ LEKMKKYASV IRVIAHTQIR KMKGLKQKKA HLMEIQVNGG
201: TIADKVDYGY KFFEKEVPVD AVFQKDEMID IIGVTKGKGY EGVVTRWGVT RLPRKTHRGL RKVACIGAWH PARVSYTVAR AGQNGYHHRT EMNKKVYKIG
301: KAGQETHDAS TEFDRTEKDI TPMGGFPHYG IVKGDYLMIK GCCVGPKKRV VTLRQSLLKQ TSRLALEEIK LKFIDTSSKF GHGRFQTTDE KQRFFGKLKA

Best Arabidopsis Sequence Match ( AT1G43170.5 )
(BLAST)

001: MSHRKFEHPR HGSLGFLPRK RANRHRGKVK AFPKDDQTKP CKFTAFMGYK AGMTHIVREV EKPGSKLHKK ETCEAVTIIE TPAMVVVGVV AYVKTPRGLR
101: SLNTVWAQHL SEEVRRRFYK NWAKSKKKAF TGYAKQYDSE DGKKGIQAQL EKMKKYATVI RVLAHTQIRK MKGLKQKKAH MMEIQINGGT IAQKVDFAYS
201: FFEKQIPIEA VFQKDEMIDI IGVTKGKGYE GVVTRWGVTR LPRKTHRGLR KVACIGAWHP ARVSYTVARA GQNGYHHRTE LNKKIYRLGK VGTEAHTAMT
301: EYDRTEKDVT PMGGFPHYGI VKDDYLMIKG CCVGPKKRVV TLRQSLLTQT SRLALEEIKL KFIDTASIFG HGRFQTSLEK MRFYNRVTK

Arabidopsis Description

ARP160S ribosomal protein L3-1 [Source:UniProtKB/Swiss-Prot;Acc:P17094]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.