CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, secretory
BaCelLo:	secretory
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_07s0031g02050.t01	Wine grape	cytosol	39.39	18.57
CDY03838	Canola	cytosol, mitochondrion	48.48	15.38
CDY15022	Canola	cytosol	48.48	15.38
CDY26350	Canola	cytosol	48.48	15.38
CDY68012	Canola	cytosol	81.82	15.0
CDY33490	Canola	cytosol	63.64	13.42
CDY72003	Canola	cytosol	63.64	13.42
KRH36391	Soybean	endoplasmic reticulum	72.73	12.34
CDX77707	Canola	cytosol	66.67	12.26
CDY33488	Canola	extracellular	66.67	12.26
CDY52305	Canola	cytosol	66.67	12.26
PGSC0003DMT400076546	Potato	cytosol	71.21	12.08
Solyc01g104590.2.1	Tomato	endoplasmic reticulum, nucleus, plastid, unclear	71.21	12.08
CDY02391	Canola	extracellular	65.15	11.98
CDY12965	Canola	cytosol	65.15	11.98
TraesCS5A01G112400.1	Wheat	cytosol, golgi, nucleus	69.7	11.83
KXG27825	Sorghum	cytosol	69.7	11.83
EES12864	Sorghum	cytosol, plastid	68.18	11.57
Os11t0168200-01	Rice	nucleus	68.18	11.57
TraesCS5B01G118400.1	Wheat	cytosol, unclear	66.67	11.31
Os12t0167900-01	Rice	plastid	66.67	11.31
KRH27524	Soybean	endoplasmic reticulum, nucleus	72.73	11.09
Zm00001d003680_P003	Maize	cytosol	65.15	11.05
Zm00001d004839_P005	Maize	cytosol	65.15	11.05
Zm00001d004841_P002	Maize	cytosol	65.15	11.05
Zm00001d028622_P001	Maize	cytosol	65.15	11.05
TraesCS4A01G208000.1	Wheat	golgi, unclear	63.64	10.8
TraesCS4B01G111500.1	Wheat	cytosol	63.64	10.8
Zm00001d003683_P005	Maize	cytosol, mitochondrion, plasma membrane, plastid	65.15	10.75
HORVU5Hr1G036630.1	Barley	plasma membrane	65.15	10.51
HORVU4Hr1G019980.1	Barley	cytosol	63.64	10.22
Zm00001d002463_P001	Maize	cytosol	36.36	9.49
CDY15023	Canola	cytosol	10.61	6.67
CDY26351	Canola	cytosol	9.09	5.83
CDY03839	Canola	cytosol	9.09	5.83

Protein Annotations

EnsemblPlants:CDY45154	EnsemblPlantsGene:GSBRNA2T00081572001	Gene3D:2.40.30.10	PANTHER:PTHR11363	PANTHER:PTHR11363:SF6	ProteinID:CDY45154
ProteinID:CDY45154.1	UniParc:UPI0004EE3997	UniProt:A0A078I6W5	MapMan:35.2	:	:

Description

BnaA09g14380DBnaA09g14380D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I6W5]

Coordinates

chrLK032616:-:182281..183507

Molecular Weight (calculated)

7563.0 Da

IEP (calculated)

8.067

GRAVY (calculated)

-0.473

Length

66 amino acids

Sequence
(BLAST)

1: MVCRWCGWVR EDTACGLRSL TTVWAQHLSE EEEIKLKFID TSSNGGHGRF QTAEEKAKFY GRVIKA

Best Arabidopsis Sequence Match ( AT1G61580.1 )
(BLAST)

001: MSHRKFEHPR HGSLGFLPRK RASRHRGKVK AFPKDDPTKP CRLTSFLGYK AGMTHIVRDV EKPGSKLHKK ETCEAVTIIE TPPMVVVGVV GYVKTPRGLR
101: SLCTVWAQHL SEELRRRFYK NWAKSKKKAF TRYSKKHETE EGKKDIQSQL EKMKKYCSVI RVLAHTQIRK MKGLKQKKAH LNEIQINGGD IAKKVDYACS
201: LFEKQVPVDA IFQKDEMIDI IGVTKGKGYE GVVTRWGVTR LPRKTHRGLR KVACIGAWHP ARVSYTVARA GQNGYHHRTE MNKKVYRVGK VGQETHSAMT
301: EYDRTEKDIT PMGGFPHYGI VKEDYLMIKG CCVGPKKRVV TLRQTLLKQT SRLAMEEIKL KFIDAASNGG HGRFQTSQEK AKFYGRTIKA

Arabidopsis Description

ARP260S ribosomal protein L3-2 [Source:UniProtKB/Swiss-Prot;Acc:P22738]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.