CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
peroxisome 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	peroxisome
WoLF PSORT:	peroxisome
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY72003	Canola	cytosol	100.0	100.0
Bra024985.1-P	Field mustard	cytosol	99.68	90.43
CDX77707	Canola	cytosol	100.0	87.19
CDY52305	Canola	cytosol	100.0	87.19
CDY33488	Canola	extracellular	99.68	86.91
CDY02391	Canola	extracellular	98.72	86.07
CDY12965	Canola	cytosol	96.49	84.12
Bra024986.1-P	Field mustard	cytosol	99.68	79.8
CDY03838	Canola	cytosol, mitochondrion	52.4	78.85
CDY15022	Canola	cytosol	52.4	78.85
CDY26350	Canola	cytosol	52.4	78.85
AT1G43170.1	Thale cress	cytosol	90.1	72.49
CDY68012	Canola	cytosol	82.11	71.39
Os11t0168200-01	Rice	nucleus	81.79	65.81
TraesCS4B01G111500.1	Wheat	cytosol	81.47	65.55
Zm00001d003680_P003	Maize	cytosol	81.15	65.3
Zm00001d004839_P005	Maize	cytosol	81.15	65.3
Zm00001d004841_P002	Maize	cytosol	81.15	65.3
TraesCS4A01G208000.1	Wheat	golgi, unclear	81.15	65.3
Os12t0167900-01	Rice	plastid	81.15	65.3
Zm00001d028622_P001	Maize	cytosol	81.15	65.3
EES12864	Sorghum	cytosol, plastid	80.83	65.04
TraesCS5A01G112400.1	Wheat	cytosol, golgi, nucleus	80.83	65.04
TraesCS5B01G118400.1	Wheat	cytosol, unclear	80.83	65.04
KXG27825	Sorghum	cytosol	80.51	64.78
Zm00001d002463_P001	Maize	cytosol	52.08	64.43
CDY45154	Canola	cytosol	13.42	63.64
Zm00001d003683_P005	Maize	cytosol, mitochondrion, plasma membrane, plastid	81.15	63.5
HORVU4Hr1G019980.1	Barley	cytosol	81.47	62.04
HORVU5Hr1G036630.1	Barley	plasma membrane	80.19	61.37
CDY15023	Canola	cytosol	15.34	45.71
CDY26351	Canola	cytosol	13.1	39.81
CDY03839	Canola	cytosol	13.1	39.81

Protein Annotations

MapMan:17.1.2.1.1	Gene3D:2.40.30.10	Gene3D:3.30.1430.10	GO:A0A078JWG5	UniProt:A0A078JWG5	EnsemblPlants:CDY33490
ProteinID:CDY33490	ProteinID:CDY33490.1	ProteinID:CDY72003.1	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00054738001
PFAM:PF00297	PANTHER:PTHR11363	PANTHER:PTHR11363:SF6	InterPro:Ribosomal_L3	SUPFAM:SSF50447	InterPro:Transl_B-barrel_sf
UniParc:UPI0004EEBB95	SEG:seg	:	:	:	:

Description

BnaA06g35830DBnaA06g35830D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JWG5]

Coordinates

chrLK032315:+:259161..260371

Molecular Weight (calculated)

35641.5 Da

IEP (calculated)

10.457

GRAVY (calculated)

-0.563

Length

313 amino acids

Sequence
(BLAST)

001: MGYKAGMTHI VRDVEKPGSK LHKKETCEAV TIIETPAMVV VGVVAYVKTP RGLRSLNTVW AQHLSEEVRR RFYKNWAKSK KKAFTGYAKQ YETEEGKKSI
101: QSQLEKMKKY GTVIRVLAHT QIRKMKGLKQ KKAHMMEIQI NGGTIAQKVD FAYSFFEKQI PIDAVFQKDE MIDVACIGAW HPARVSYTVA RAGQNGYHHR
201: TELNKKIYRL GKVGQETHTA MTEYDRTEKD VTPMGGFAHY GVVKDDYLMI KGCCMGPKKR VVTLRQSLLT QTSRLAMEQI NLKFIDTSSK MGHGKFQTTQ
301: EKNKFYGRAS AKA

Best Arabidopsis Sequence Match ( AT1G43170.3 )
(BLAST)

001: MSHRKFEHPR HGSLGFLPRK RANRHRGKVK AFPKDDQTKP CKFTAFMGYK AGMTHIVREV EKPGSKLHKK ETCEAVTIIE TPAMVVVGVV AYVKTPRGLR
101: SLNTVWAQHL SEEVRRRFYK NWAKSKKKAF TGYAKQYDSE DGKKGIQAQL EKMKKYATVI RVLAHTQIRK MKGLKQKKAH MMEIQINGGT IAQKVDFAYS
201: FFEKQIPIEA VFQKDEMIDI IGVTKGKGYE GVVTRWGVTR LPRKTHRGLR KVACIGAWHP ARVSYTVARA GQNGYHHRTE LNKKIYRLGK VGTEAHTAMT
301: EYDRTEKDVT PMGGFPHYGI VKDDYLMIKG CCVGPKKRVV TLRQSLLTQT SRLALEEIKL KFIDTASIFG HGRFQTSLEK MRFYNRVTK

Arabidopsis Description

ARP160S ribosomal protein L3-1 [Source:UniProtKB/Swiss-Prot;Acc:P17094]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.