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Barley
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Barley
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane

Predictor Summary:
  • cytosol 2
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane
Any Predictor:cytosol, mitochondrion
MultiLoc:cytosol
TargetP:mitochondrion
YLoc:cytosol
 plasma membrane: 29385242
msms PMID: 29385242 doi
K Witzel, A Matros, ALB Møller, E Ramireddy, C Finnie, M Peukert, T Rutten, A Herzog, G Kunze, M Melzer, S Kaspar-Schoenefeld, T Schmülling, B Svensson, HP Mock
Biosystems Engineering, Fraunhofer Institute for Factory Operation and Automation, Joseph-von-Fraunhofer-Straße 1, 39106, Magdeburg, Germany., Institute of Biology/Applied Genetics, Dahlem Centre of Plant Sciences, Free University of Berlin, Albrecht-Thaer-Weg 6, 14195, Berlin, Germany., Leibniz Institute of Plant Genetics and Crop Plant Research, Corrensstraße 3, 06466, Stadt Seeland, Gatersleben, Germany., Leibniz Institute of Vegetable and Ornamental Crops, Theodor-Echtermeyer-Weg 1, 14979, Großbeeren, Germany., Technical University of Denmark, Søltofts Plads, Building 224, 2800, Kongens Lyngby, Denmark.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS5D01G129200.1 Wheat cytosol, golgi 93.4 98.2
TraesCS5B01G118400.1 Wheat cytosol, unclear 93.15 97.94
TraesCS5A01G112400.1 Wheat cytosol, golgi, nucleus 92.42 97.17
Os12t0167900-01 Rice plastid 90.95 95.63
HORVU4Hr1G019980.1 Barley cytosol 90.22 89.78
GSMUA_Achr7P03150_001 Banana plasma membrane 83.62 87.92
GSMUA_Achr5P01070_001 Banana cytosol 83.37 87.66
GSMUA_Achr11P... Banana cytosol, plastid 82.89 87.15
Solyc01g104590.2.1 Tomato endoplasmic reticulum, nucleus, plastid, unclear 82.64 86.89
GSMUA_Achr5P01330_001 Banana cytosol 81.66 85.86
VIT_18s0072g00340.t01 Wine grape cytosol 83.13 85.64
KRG91678 Soybean cytosol 81.42 85.6
KRH35119 Soybean nucleus 81.17 85.35
KRH36391 Soybean endoplasmic reticulum 80.68 84.83
AT1G43170.1 Thale cress cytosol 80.2 84.32
Bra038589.1-P Field mustard cytosol 79.71 83.8
Bra031423.1-P Field mustard cytosol 79.22 83.29
VIT_12s0035g01020.t01 Wine grape cytosol 76.28 82.98
AT1G61580.1 Thale cress cytosol 78.97 82.82
CDY26350 Canola cytosol 41.81 82.21
CDY03838 Canola cytosol, mitochondrion 41.81 82.21
Bra024986.1-P Field mustard cytosol 78.48 82.1
CDY15023 Canola cytosol 21.03 81.9
Bra035298.1-P Field mustard cytosol, peroxisome, plastid 78.24 81.84
Bra024985.1-P Field mustard cytosol 68.95 81.74
CDY15022 Canola cytosol 41.56 81.73
CDY68012 Canola cytosol 71.88 81.67
CDY33488 Canola extracellular 71.15 81.06
GSMUA_AchrUn_... Banana cytosol 84.11 80.94
CDX77707 Canola cytosol 70.9 80.78
CDY52305 Canola cytosol 70.9 80.78
CDY02391 Canola extracellular 70.66 80.5
CDY33490 Canola cytosol 61.37 80.19
CDY72003 Canola cytosol 61.37 80.19
Bra027986.1-P Field mustard cytosol 69.44 80.0
CDY12965 Canola cytosol 70.17 79.94
CDY03839 Canola cytosol 19.56 77.67
CDY26351 Canola cytosol 19.56 77.67
KRH27524 Soybean endoplasmic reticulum, nucleus 81.42 76.91
Bra027830.1-P Field mustard cytosol 39.85 74.77
Solyc01g103510.2.1 Tomato endoplasmic reticulum, nucleus 80.93 74.72
CDY45154 Canola cytosol 10.51 65.15
VIT_07s0031g02050.t01 Wine grape cytosol 18.83 55.0
GSMUA_Achr6P19610_001 Banana plastid 9.05 47.44
PGSC0003DMT400093371 Potato cytosol 9.05 44.58
Bra000894.1-P Field mustard cytosol 35.94 14.71
Protein Annotations
MapMan:17.1.2.1.1Gene3D:2.40.30.10Gene3D:3.30.1430.10Gene3D:4.10.960.10UniProt:A0A287QVI3EMBL:AK363611
GO:GO:0003674GO:GO:0003735GO:GO:0005198GO:GO:0005575GO:GO:0005622GO:GO:0005623
GO:GO:0005737GO:GO:0005840GO:GO:0006412GO:GO:0008150GO:GO:0008152GO:GO:0009058
GO:GO:0009987GO:GO:0019538GO:GO:0030529EnsemblPlantsGene:HORVU5Hr1G036630EnsemblPlants:HORVU5Hr1G036630.1PFAM:PF00297
ScanProsite:PS00474PANTHER:PTHR11363PANTHER:PTHR11363:SF6InterPro:Ribosomal_L3InterPro:Ribosomal_L3_CSSUPFAM:SSF50447
InterPro:Transl_B-barrel_sfUniParc:UPI000B47B1ADSEG:seg:::
Description
No Description!
Coordinates
chrchr5H:+:259948875..259951686
Molecular Weight (calculated)
46943.5 Da
IEP (calculated)
10.902
GRAVY (calculated)
-0.724
Length
409 amino acids
Sequence
(BLAST)
001: SRRRRRRRRR STAGKEGAAA MSHRKFEHPR HGSLGFLPRK RCSRHRGKVK SFPKDDQQKP CHLTAFLGYK AGMTHIVREV EKPGSKLHKK ETCEAVTIIE
101: TPPLVIVGLV AYVKTPRGLR TLNSVWAQHL SEDVRRRFYK NWCKSKKKAF TKYALKYDSD AGKKEIQLQL EKMKKYATIV RVIAHTQIRK MKGLKQKKAH
201: LMEIQVNGGT IADKVDYGYK FFEKEVPVEA VFQKDEMIDI IGVTKGKGYE GVVTRWGVTR LPRKTHRGLR KVACIGAWHP ARVSYTVARA GQNGYHHRTE
301: MNKKVYKIGK SGQESHEACT EFDRTEKDIT PMGGFPHYGV VKGDYLMIKG CCVGPKKRVV TLRQSLLKQT SRLALEDIKL KFIDTSSKFG HGRFQTTEEK
401: QRFYGKLKA
Best Arabidopsis Sequence Match ( AT1G43170.5 )
(BLAST)
001: MSHRKFEHPR HGSLGFLPRK RANRHRGKVK AFPKDDQTKP CKFTAFMGYK AGMTHIVREV EKPGSKLHKK ETCEAVTIIE TPAMVVVGVV AYVKTPRGLR
101: SLNTVWAQHL SEEVRRRFYK NWAKSKKKAF TGYAKQYDSE DGKKGIQAQL EKMKKYATVI RVLAHTQIRK MKGLKQKKAH MMEIQINGGT IAQKVDFAYS
201: FFEKQIPIEA VFQKDEMIDI IGVTKGKGYE GVVTRWGVTR LPRKTHRGLR KVACIGAWHP ARVSYTVARA GQNGYHHRTE LNKKIYRLGK VGTEAHTAMT
301: EYDRTEKDVT PMGGFPHYGI VKDDYLMIKG CCVGPKKRVV TLRQSLLTQT SRLALEEIKL KFIDTASIFG HGRFQTSLEK MRFYNRVTK
Arabidopsis Description
ARP160S ribosomal protein L3-1 [Source:UniProtKB/Swiss-Prot;Acc:P17094]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.