Factsheet for Solyc01g103510.2.1

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, nucleus

Predictor Summary:

plastid 4
cytosol 5

Predictors

GFP

MS/MS

Papers

nucleus: 28394025
endoplasmic reticulum: 29145071

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 29145071 doi

P Ibort, H Imai, M Uemura, R Aroca

Departamento de Microbiología del Suelo y Sistemas Simbióticos, Estación Experimental del Zaidín (EEZ-CSIC), Profesor Albareda 1, 18008 Granada, Spain. Electronic address: pablo.ibort@eez.csic.es., Departamento de Microbiología del Suelo y Sistemas Simbióticos, Estación Experimental del Zaidín (EEZ-CSIC), Profesor Albareda 1, 18008 Granada, Spain. Electronic address: raroca@eez.csic.es., United Graduate School of Agricultural Sciences, Iwate University, Morioka, Iwate 020-8550, Japan; Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, 3-18-8 Ueda, Morioka, Iwate 020-8550, Japan. Electronic address: u0414004@iwate-u.ac.jp., United Graduate School of Agricultural Sciences, Iwate University, Morioka, Iwate 020-8550, Japan; Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, 3-18-8 Ueda, Morioka, Iwate 020-8550, Japan. Electronic address: uemura@iwate-u.ac.jp.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400064116	Potato	cytosol	86.91	98.97
Solyc01g104590.2.1	Tomato	endoplasmic reticulum, nucleus, plastid, unclear	81.26	92.55
VIT_12s0035g01020.t01	Wine grape	cytosol	76.07	89.63
CDY15023	Canola	cytosol	21.22	89.52
Bra038589.1-P	Field mustard	cytosol	78.33	89.2
AT1G61580.1	Thale cress	cytosol	78.1	88.72
Bra031423.1-P	Field mustard	cytosol	77.88	88.69
CDY26350	Canola	cytosol	41.31	87.98
CDY15022	Canola	cytosol	41.08	87.5
CDY68012	Canola	cytosol	71.11	87.5
CDY03838	Canola	cytosol, mitochondrion	40.86	87.02
CDY03839	Canola	cytosol	19.86	85.44
Zm00001d004839_P005	Maize	cytosol	74.94	85.35
EES12864	Sorghum	cytosol, plastid	74.94	85.35
Zm00001d003680_P003	Maize	cytosol	74.94	85.35
Zm00001d004841_P002	Maize	cytosol	74.94	85.35
Zm00001d028622_P001	Maize	cytosol	74.72	85.09
KXG27825	Sorghum	cytosol	74.49	84.83
Os11t0168200-01	Rice	nucleus	74.49	84.83
CDY26351	Canola	cytosol	19.64	84.47
Os12t0167900-01	Rice	plastid	73.81	84.06
TraesCS5A01G112400.1	Wheat	cytosol, golgi, nucleus	73.81	84.06
TraesCS5B01G118400.1	Wheat	cytosol, unclear	73.59	83.8
TraesCS4B01G111500.1	Wheat	cytosol	73.14	83.29
Zm00001d003683_P005	Maize	cytosol, mitochondrion, plasma membrane, plastid	75.17	83.25
TraesCS4A01G208000.1	Wheat	golgi, unclear	72.91	83.03
Zm00001d002463_P001	Maize	cytosol	46.5	81.42
HORVU5Hr1G036630.1	Barley	plasma membrane	74.72	80.93
Bra027830.1-P	Field mustard	cytosol	39.05	79.36
HORVU4Hr1G019980.1	Barley	cytosol	73.36	79.08
GSMUA_Achr6P19610_001	Banana	plastid	7.9	44.87
TraesCS4D01G109300.1	Wheat	cytosol, golgi, nucleus	9.71	18.3
Bra000894.1-P	Field mustard	cytosol	33.63	14.91

Protein Annotations

MapMan:17.1.2.1.1	Gene3D:2.40.30.10	Gene3D:3.30.1430.10	Gene3D:4.10.960.10	GO:GO:0000027	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003735	GO:GO:0005198	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0005840	GO:GO:0006412
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016043	GO:GO:0019538
GO:GO:0022625	GO:GO:0030529	UniProt:K4B1S7	PFAM:PF00297	ScanProsite:PS00474	PANTHER:PTHR11363
PANTHER:PTHR11363:SF6	InterPro:Ribosomal_L3	InterPro:Ribosomal_L3_CS	SUPFAM:SSF50447	EnsemblPlantsGene:Solyc01g103510.2	EnsemblPlants:Solyc01g103510.2.1
InterPro:Transl_B-barrel_sf	UniParc:UPI0002768401	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr1:-:92098923..92103598

Molecular Weight (calculated)

50591.9 Da

IEP (calculated)

10.753

GRAVY (calculated)

-0.595

Length

443 amino acids

Sequence
(BLAST)

001: MELQADGLCQ VKPLRSSSYS SETWNSKPIN SSQKATICIR RRFRQFSELL QVGKMSHRKF EHPRHGSLGF LPRKRAARHR GKVKAFPKDD PTKPCRLTAF
101: LGYKAGMTHI VREVEKPGSK LHKKETCEAV TIIETPPMIV VGVVGYVKTP RGLRCLSTVW AQHLSEEIKR RFYKNWCMSK KKAFAKYSKK YETDEGKKDI
201: NAQLEKMKKY CSVIRVLAHT QIRKMKGLKQ KKAHLMEIQV NGGDAAQKVD YAYGFFEKQI PVDAIFQKDE MIDIIGVTKG KGYEGVVTRW GVTRLPRKTH
301: RGLRKVACIG AWHPARVSFT VARAGQNGYH HRTEMNKKVY RLGKAGQESH SAITEFDRTE KEITPIGGFP HYGVVKEDFL LIKGCCVGPK KRVVTLRQSL
401: LNQTSRVAME EIKLKFIDTS SKFGHGRFQT TQEKAKFYGR IKA

Best Arabidopsis Sequence Match ( AT1G61580.1 )
(BLAST)

001: MSHRKFEHPR HGSLGFLPRK RASRHRGKVK AFPKDDPTKP CRLTSFLGYK AGMTHIVRDV EKPGSKLHKK ETCEAVTIIE TPPMVVVGVV GYVKTPRGLR
101: SLCTVWAQHL SEELRRRFYK NWAKSKKKAF TRYSKKHETE EGKKDIQSQL EKMKKYCSVI RVLAHTQIRK MKGLKQKKAH LNEIQINGGD IAKKVDYACS
201: LFEKQVPVDA IFQKDEMIDI IGVTKGKGYE GVVTRWGVTR LPRKTHRGLR KVACIGAWHP ARVSYTVARA GQNGYHHRTE MNKKVYRVGK VGQETHSAMT
301: EYDRTEKDIT PMGGFPHYGI VKEDYLMIKG CCVGPKKRVV TLRQTLLKQT SRLAMEEIKL KFIDAASNGG HGRFQTSQEK AKFYGRTIKA

Arabidopsis Description

ARP260S ribosomal protein L3-2 [Source:UniProtKB/Swiss-Prot;Acc:P22738]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.