CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

plastid 3
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG27825	Sorghum	cytosol	97.17	97.17
Zm00001d002463_P001	Maize	cytosol	59.9	92.09
GSMUA_Achr5P01070_001	Banana	cytosol	89.2	89.2
GSMUA_Achr11P...	Banana	cytosol, plastid	89.2	89.2
GSMUA_Achr7P03150_001	Banana	plasma membrane	88.69	88.69
GSMUA_Achr5P01330_001	Banana	cytosol	87.15	87.15
Solyc01g104590.2.1	Tomato	endoplasmic reticulum, nucleus, plastid, unclear	86.89	86.89
VIT_18s0072g00340.t01	Wine grape	cytosol	88.43	86.65
KRH36391	Soybean	endoplasmic reticulum	85.86	85.86
KRG91678	Soybean	cytosol	85.6	85.6
KRH35119	Soybean	nucleus	85.35	85.35
AT1G61580.1	Thale cress	cytosol	84.58	84.36
AT1G43170.1	Thale cress	cytosol	84.06	84.06
Bra038589.1-P	Field mustard	cytosol	83.8	83.8
Bra031423.1-P	Field mustard	cytosol	83.8	83.8
CDY26350	Canola	cytosol	44.73	83.65
VIT_12s0035g01020.t01	Wine grape	cytosol	80.72	83.51
CDY15022	Canola	cytosol	44.47	83.17
CDY03838	Canola	cytosol, mitochondrion	44.47	83.17
Bra024985.1-P	Field mustard	cytosol	73.01	82.32
CDY68012	Canola	cytosol	76.09	82.22
Bra024986.1-P	Field mustard	cytosol	82.52	82.1
Bra035298.1-P	Field mustard	cytosol, peroxisome, plastid	82.26	81.84
GSMUA_AchrUn_...	Banana	cytosol	88.69	81.18
CDY33488	Canola	extracellular	74.81	81.06
CDY15023	Canola	cytosol	21.85	80.95
CDY72003	Canola	cytosol	65.04	80.83
CDY33490	Canola	cytosol	65.04	80.83
CDX77707	Canola	cytosol	74.55	80.78
CDY52305	Canola	cytosol	74.55	80.78
CDY02391	Canola	extracellular	74.29	80.5
Bra027986.1-P	Field mustard	cytosol	73.01	80.0
CDY12965	Canola	cytosol	73.78	79.94
KRH27524	Soybean	endoplasmic reticulum, nucleus	86.38	77.6
CDY03839	Canola	cytosol	20.31	76.7
Bra027830.1-P	Field mustard	cytosol	42.67	76.15
CDY26351	Canola	cytosol	20.05	75.73
Solyc01g103510.2.1	Tomato	endoplasmic reticulum, nucleus	85.35	74.94
CDY45154	Canola	cytosol	11.57	68.18
VIT_07s0031g02050.t01	Wine grape	cytosol	19.54	54.29
PGSC0003DMT400093371	Potato	cytosol	9.77	45.78
GSMUA_Achr6P19610_001	Banana	plastid	9.0	44.87
Bra000894.1-P	Field mustard	cytosol	38.3	14.91

Protein Annotations

MapMan:17.1.2.1.1	Gene3D:2.40.30.10	Gene3D:3.30.1430.10	Gene3D:4.10.960.10	EntrezGene:8066789	UniProt:C5YG29
EnsemblPlants:EES12864	ProteinID:EES12864	ProteinID:EES12864.1	GO:GO:0000027	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003735	GO:GO:0005198	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016043	GO:GO:0019538	GO:GO:0022625
GO:GO:0030529	PFAM:PF00297	ScanProsite:PS00474	PANTHER:PTHR11363	PANTHER:PTHR11363:SF6	InterPro:Ribosomal_L3
InterPro:Ribosomal_L3_CS	EnsemblPlantsGene:SORBI_3006G216600	SUPFAM:SSF50447	unigene:Sbi.14148	InterPro:Transl_B-barrel_sf	UniParc:UPI0001A87628
RefSeq:XP_002448536.1	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr6:-:56443402..56446011

Molecular Weight (calculated)

44486.5 Da

IEP (calculated)

10.734

GRAVY (calculated)

-0.670

Length

389 amino acids

Sequence
(BLAST)

001: MSHRKFEHPR HGSLGFLPRK RSSRHRGKVK SFPRDDPKKP CHLTAFVGYK AGMTHIVREV EKPGSKLHKK ETCEAVTIIE TPPLVIVGLV AYVKTPRGLR
101: TLNSVWAQHL SEEVRRRFYK NWCKSKKKAF TKYALKYDSD AGKKEIQLQL EKMKKYASVI RVIAHTQIKK MKGLKQKKAH LMEIQVNGGT IADKVDYGYK
201: FFEKEVPVDA VFQKDEMIDI IGVTKGKGYE GVVTRWGVTR LPRKTHRGLR KVACIGAWHP ARVSYTVARA GQNGYHHRTE MNKKVYKIGK AGQESHDAST
301: EFDRTEKDIT PMGGFPHYGI VKGDYLMIKG CCVGPKKRVV TLRQSLLKQT SRLALEEIKL KFIDTSSKFG HGRFQTTDEK QKFYGKQKA

Best Arabidopsis Sequence Match ( AT1G43170.5 )
(BLAST)

001: MSHRKFEHPR HGSLGFLPRK RANRHRGKVK AFPKDDQTKP CKFTAFMGYK AGMTHIVREV EKPGSKLHKK ETCEAVTIIE TPAMVVVGVV AYVKTPRGLR
101: SLNTVWAQHL SEEVRRRFYK NWAKSKKKAF TGYAKQYDSE DGKKGIQAQL EKMKKYATVI RVLAHTQIRK MKGLKQKKAH MMEIQINGGT IAQKVDFAYS
201: FFEKQIPIEA VFQKDEMIDI IGVTKGKGYE GVVTRWGVTR LPRKTHRGLR KVACIGAWHP ARVSYTVARA GQNGYHHRTE LNKKIYRLGK VGTEAHTAMT
301: EYDRTEKDVT PMGGFPHYGI VKDDYLMIKG CCVGPKKRVV TLRQSLLTQT SRLALEEIKL KFIDTASIFG HGRFQTSLEK MRFYNRVTK

Arabidopsis Description

ARP160S ribosomal protein L3-1 [Source:UniProtKB/Swiss-Prot;Acc:P17094]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.