Factsheet for Bra035298.1-P

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, plastid, cytosol

Predictor Summary:

plastid 2
cytosol 3
peroxisome 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY02391	Canola	extracellular	91.82	100.0
Bra024985.1-P	Field mustard	cytosol	86.7	98.26
Bra024986.1-P	Field mustard	cytosol	98.21	98.21
Bra027986.1-P	Field mustard	cytosol	89.0	98.03
AT1G43170.1	Thale cress	cytosol	92.33	92.8
Bra031423.1-P	Field mustard	cytosol	84.91	85.35
Bra038589.1-P	Field mustard	cytosol	84.91	85.35
TraesCS5A01G112400.1	Wheat	cytosol, golgi, nucleus	82.61	83.03
TraesCS4B01G111500.1	Wheat	cytosol	82.61	83.03
Os11t0168200-01	Rice	nucleus	82.61	83.03
TraesCS5B01G118400.1	Wheat	cytosol, unclear	82.35	82.78
TraesCS4A01G208000.1	Wheat	golgi, unclear	82.35	82.78
Os12t0167900-01	Rice	plastid	82.35	82.78
Zm00001d028622_P001	Maize	cytosol	82.1	82.52
Zm00001d003680_P003	Maize	cytosol	82.1	82.52
Zm00001d004839_P005	Maize	cytosol	82.1	82.52
Zm00001d004841_P002	Maize	cytosol	82.1	82.52
EES12864	Sorghum	cytosol, plastid	81.84	82.26
KXG27825	Sorghum	cytosol	81.33	81.75
Zm00001d003683_P005	Maize	cytosol, mitochondrion, plasma membrane, plastid	82.1	80.25
HORVU4Hr1G019980.1	Barley	cytosol	82.61	78.59
HORVU5Hr1G036630.1	Barley	plasma membrane	81.84	78.24
Bra027830.1-P	Field mustard	cytosol	43.48	77.98
Zm00001d002463_P001	Maize	cytosol	49.62	76.68
Bra000894.1-P	Field mustard	cytosol	37.6	14.71

Protein Annotations

MapMan:17.1.2.1.1	Gene3D:2.40.30.10	Gene3D:3.30.1430.10	Gene3D:4.10.960.10	EnsemblPlantsGene:Bra035298	EnsemblPlants:Bra035298.1
EnsemblPlants:Bra035298.1-P	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	GO:GO:0030529	UniProt:M4F2J9	PFAM:PF00297
ScanProsite:PS00474	PANTHER:PTHR11363	PANTHER:PTHR11363:SF6	InterPro:Ribosomal_L3	InterPro:Ribosomal_L3_CS	SUPFAM:SSF50447
InterPro:Transl_B-barrel_sf	UniParc:UPI000253E5D7	SEG:seg	:	:	:

Description

AT1G43170 (E=8e-210) ARP1, RPL3A | ARP1 (ARABIDOPSIS RIBOSOMAL PROTEIN 1); structural constituent of ribosome

Coordinates

chrScaffold000103:+:138014..139735

Molecular Weight (calculated)

44643.7 Da

IEP (calculated)

10.828

GRAVY (calculated)

-0.649

Length

391 amino acids

Sequence
(BLAST)

001: MSHRKFEHPR HGSLGFLPRK RANRHRGKVK AFPKDDQTKP CKFTAFMGYK AGMTHIVRDV EKPGSKLHKK ETCEAVTIIE TPAMVVVGVV AYVKTPRGLR
101: SLNTVWAQHL SEEVRRRFYK NWAKSKKKAF TGYAKQYETE EGKKSIQSQL EKMKKYGTVI RVLAHTQIRK MKGLKQKKAH MMEIQINGGT IAQKVDFAYS
201: FFEKQIPIDA VFQKDEMIDV IGVTKGKGYE GVVTRWGVTR LPRKAHRGLR KVACIGAWHP ARVSYTVARA GQNGYHHRTE LNKKIYRLGK VGQETHTAMT
301: EYDRTEKDVT PMGGFAHYGV VKDDYLMIKG CCMGPKKRVV TLRQSLLTQT SRLAMEQINL KFIDTSSKMG HGKFQTTQEK NKFYGRAATK A

Best Arabidopsis Sequence Match ( AT1G43170.5 )
(BLAST)

001: MSHRKFEHPR HGSLGFLPRK RANRHRGKVK AFPKDDQTKP CKFTAFMGYK AGMTHIVREV EKPGSKLHKK ETCEAVTIIE TPAMVVVGVV AYVKTPRGLR
101: SLNTVWAQHL SEEVRRRFYK NWAKSKKKAF TGYAKQYDSE DGKKGIQAQL EKMKKYATVI RVLAHTQIRK MKGLKQKKAH MMEIQINGGT IAQKVDFAYS
201: FFEKQIPIEA VFQKDEMIDI IGVTKGKGYE GVVTRWGVTR LPRKTHRGLR KVACIGAWHP ARVSYTVARA GQNGYHHRTE LNKKIYRLGK VGTEAHTAMT
301: EYDRTEKDVT PMGGFPHYGI VKDDYLMIKG CCVGPKKRVV TLRQSLLTQT SRLALEEIKL KFIDTASIFG HGRFQTSLEK MRFYNRVTK

Arabidopsis Description

ARP160S ribosomal protein L3-1 [Source:UniProtKB/Swiss-Prot;Acc:P17094]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.