Factsheet for HORVU4Hr1G019980.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plastid
iPSORT:	plastid
MultiLoc:	cytosol
TargetP:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4D01G109200.1	Wheat	cytosol, golgi, unclear	94.65	100.0
TraesCS4B01G111500.1	Wheat	cytosol	94.65	100.0
TraesCS4A01G208000.1	Wheat	golgi, unclear	93.92	99.23
Zm00001d028622_P001	Maize	cytosol	89.54	94.6
Zm00001d004841_P002	Maize	cytosol	89.54	94.6
Zm00001d004839_P005	Maize	cytosol	89.54	94.6
Zm00001d003680_P003	Maize	cytosol	89.54	94.6
KXG27825	Sorghum	cytosol	88.81	93.83
Os11t0168200-01	Rice	nucleus	88.56	93.57
Zm00001d003683_P005	Maize	cytosol, mitochondrion, plasma membrane, plastid	90.02	92.5
HORVU5Hr1G036630.1	Barley	plasma membrane	89.78	90.22
GSMUA_Achr11P...	Banana	cytosol, plastid	82.97	87.66
GSMUA_Achr5P01070_001	Banana	cytosol	82.73	87.4
Solyc01g104590.2.1	Tomato	endoplasmic reticulum, nucleus, plastid, unclear	82.48	87.15
GSMUA_Achr7P03150_001	Banana	plasma membrane	82.24	86.89
VIT_18s0072g00340.t01	Wine grape	cytosol	83.21	86.15
KRG91678	Soybean	cytosol	81.27	85.86
KRH35119	Soybean	nucleus	81.02	85.6
GSMUA_Achr5P01330_001	Banana	cytosol	80.54	85.09
AT1G43170.1	Thale cress	cytosol	80.05	84.58
KRH36391	Soybean	endoplasmic reticulum	79.56	84.06
Bra038589.1-P	Field mustard	cytosol	79.08	83.55
AT1G61580.1	Thale cress	cytosol	79.08	83.33
Bra024986.1-P	Field mustard	cytosol	79.08	83.12
Bra031423.1-P	Field mustard	cytosol	78.59	83.03
Bra024985.1-P	Field mustard	cytosol	69.59	82.9
VIT_12s0035g01020.t01	Wine grape	cytosol	75.67	82.71
CDY03838	Canola	cytosol, mitochondrion	41.85	82.69
CDY26350	Canola	cytosol	41.85	82.69
Bra035298.1-P	Field mustard	cytosol, peroxisome, plastid	78.59	82.61
CDY15022	Canola	cytosol	41.61	82.21
CDY33488	Canola	extracellular	71.29	81.62
CDX77707	Canola	cytosol	71.29	81.62
CDY52305	Canola	cytosol	71.29	81.62
CDY33490	Canola	cytosol	62.04	81.47
CDY72003	Canola	cytosol	62.04	81.47
CDY68012	Canola	cytosol	71.29	81.39
CDY02391	Canola	extracellular	71.05	81.34
Bra027986.1-P	Field mustard	cytosol	69.83	80.85
CDY12965	Canola	cytosol	70.56	80.78
CDY15023	Canola	cytosol	20.44	80.0
GSMUA_AchrUn_...	Banana	cytosol	82.73	80.0
KRH27524	Soybean	endoplasmic reticulum, nucleus	80.54	76.44
CDY26351	Canola	cytosol	18.98	75.73
CDY03839	Canola	cytosol	18.98	75.73
Bra027830.1-P	Field mustard	cytosol	40.15	75.69
Solyc01g103510.2.1	Tomato	endoplasmic reticulum, nucleus	79.08	73.36
CDY45154	Canola	cytosol	10.22	63.64
VIT_07s0031g02050.t01	Wine grape	cytosol	18.73	55.0
GSMUA_Achr6P19610_001	Banana	plastid	8.76	46.15
PGSC0003DMT400093371	Potato	cytosol	8.76	43.37
Bra000894.1-P	Field mustard	cytosol	35.52	14.61

Protein Annotations

MapMan:17.1.2.1.1	Gene3D:2.40.30.10	Gene3D:3.30.1430.10	Gene3D:4.10.960.10	UniProt:A0A287NGL9	GO:GO:0003674
GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0019538	EnsemblPlantsGene:HORVU4Hr1G019980	EnsemblPlants:HORVU4Hr1G019980.1	PFAM:PF00297	ScanProsite:PS00474	PANTHER:PTHR11363
PANTHER:PTHR11363:SF6	InterPro:Ribosomal_L3	InterPro:Ribosomal_L3_CS	SUPFAM:SSF50447	InterPro:Transl_B-barrel_sf	UniParc:UPI000B4896C6
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chrchr4H:+:96770575..96773221

Molecular Weight (calculated)

46967.5 Da

IEP (calculated)

10.757

GRAVY (calculated)

-0.700

Length

411 amino acids

Sequence
(BLAST)

001: PPHTTLPHPP PPPPPQGKEG RRMSHRKFEH PRHGSLGFLP RKRCSRHRGK VKAFPRDDQS KKCHLTAFLG YKAGMTHIVR EVEKPGSKLH KKETCEAVTI
101: VETPPIVIVG LVAYVKTPRG LRTLNSVWAQ HLSEDVRRRF YKNWCKSKKK AFTKYALKYD SDAGKKEIQM QLEKMKKYAT VVRVIAHTQI RKMKGLKQKK
201: AHLMEIQING GTIADKVDYG YNFFEKEVPI DAVFQKDEMI DIIGVTKGKG YEGVVTRWGV TRLPRKTHRG LRKVACIGAW HPARVSYTVA RAGQNGYHHR
301: TEMNKKVYKI GKVGQETHDA STEFDRTEKD ITPMGGFPHY GVVKADYLMI KGCCVGPKKR VVTLRQSLLK QTSRLALEEI KLKFVDTSSK FGHGRFQTTD
401: EKQRFYGKLK A

Best Arabidopsis Sequence Match ( AT1G43170.5 )
(BLAST)

001: MSHRKFEHPR HGSLGFLPRK RANRHRGKVK AFPKDDQTKP CKFTAFMGYK AGMTHIVREV EKPGSKLHKK ETCEAVTIIE TPAMVVVGVV AYVKTPRGLR
101: SLNTVWAQHL SEEVRRRFYK NWAKSKKKAF TGYAKQYDSE DGKKGIQAQL EKMKKYATVI RVLAHTQIRK MKGLKQKKAH MMEIQINGGT IAQKVDFAYS
201: FFEKQIPIEA VFQKDEMIDI IGVTKGKGYE GVVTRWGVTR LPRKTHRGLR KVACIGAWHP ARVSYTVARA GQNGYHHRTE LNKKIYRLGK VGTEAHTAMT
301: EYDRTEKDVT PMGGFPHYGI VKDDYLMIKG CCVGPKKRVV TLRQSLLTQT SRLALEEIKL KFIDTASIFG HGRFQTSLEK MRFYNRVTK

Arabidopsis Description

ARP160S ribosomal protein L3-1 [Source:UniProtKB/Swiss-Prot;Acc:P17094]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.