Factsheet for TraesCS4D01G109200.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi, unclear, cytosol

Predictor Summary:

plastid 1
cytosol 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

golgi: 23128297
unclear: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

msms, gfp PMID: 23128297 doi

M Suliman, AL Chateigner-Boutin, M Francin-Allami, A Partier, B Bouchet, J Salse, C Pont, J Marion, H Rogniaux, D Tessier, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4B01G111500.1	Wheat	cytosol	100.0	100.0
TraesCS4A01G208000.1	Wheat	golgi, unclear	99.23	99.23
HORVU4Hr1G019980.1	Barley	cytosol	100.0	94.65
Zm00001d003680_P003	Maize	cytosol	94.6	94.6
Zm00001d004839_P005	Maize	cytosol	94.6	94.6
Zm00001d004841_P002	Maize	cytosol	94.6	94.6
Zm00001d028622_P001	Maize	cytosol	94.6	94.6
TraesCS5D01G129200.1	Wheat	cytosol, golgi	94.09	94.09
KXG27825	Sorghum	cytosol	93.83	93.83
Os11t0168200-01	Rice	nucleus	93.57	93.57
Zm00001d003683_P005	Maize	cytosol, mitochondrion, plasma membrane, plastid	94.6	92.0
PGSC0003DMT400093371	Potato	cytosol	9.25	43.37
TraesCS4D01G109300.1	Wheat	cytosol, golgi, nucleus	10.28	17.02

Protein Annotations

MapMan:17.1.2.1.1	Gene3D:2.40.30.10	Gene3D:3.30.1430.10	Gene3D:4.10.960.10	GO:GO:0003674	GO:GO:0003735
GO:GO:0005198	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840
GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538
PFAM:PF00297	ScanProsite:PS00474	PANTHER:PTHR11363	PANTHER:PTHR11363:SF6	InterPro:Ribosomal_L3	InterPro:Ribosomal_L3_CS
SUPFAM:SSF50447	EnsemblPlantsGene:TraesCS4D01G109200	EnsemblPlants:TraesCS4D01G109200.1	InterPro:Transl_B-barrel_sf	SEG:seg	:

Description

No Description!

Coordinates

chr4D:-:88151901..88154667

Molecular Weight (calculated)

44594.6 Da

IEP (calculated)

10.716

GRAVY (calculated)

-0.635

Length

389 amino acids

Sequence
(BLAST)

001: MSHRKFEHPR HGSLGFLPRK RCSRHRGKVK AFPRDDQSKK CHLTAFLGYK AGMTHIVREV EKPGSKLHKK ETCEAVTIVE TPPIVIVGLV AYVKTPRGLR
101: TLNSVWAQHL SEDVRRRFYK NWCKSKKKAF TKYALKYDSD AGKKEIQMQL EKMKKYATVV RVIAHTQIRK MKGLKQKKAH LMEIQINGGT IADKVDYGYN
201: FFEKEVPIDA VFQKDEMIDI IGVTKGKGYE GVVTRWGVTR LPRKTHRGLR KVACIGAWHP ARVSYTVARA GQNGYHHRTE MNKKVYKIGK VGQETHDAST
301: EFDRTEKDIT PMGGFPHYGV VKADYLMIKG CCVGPKKRVV TLRQSLLKQT SRLALEEIKL KFVDTSSKFG HGRFQTTDEK QRFYGKLKA

Best Arabidopsis Sequence Match ( AT1G43170.5 )
(BLAST)

001: MSHRKFEHPR HGSLGFLPRK RANRHRGKVK AFPKDDQTKP CKFTAFMGYK AGMTHIVREV EKPGSKLHKK ETCEAVTIIE TPAMVVVGVV AYVKTPRGLR
101: SLNTVWAQHL SEEVRRRFYK NWAKSKKKAF TGYAKQYDSE DGKKGIQAQL EKMKKYATVI RVLAHTQIRK MKGLKQKKAH MMEIQINGGT IAQKVDFAYS
201: FFEKQIPIEA VFQKDEMIDI IGVTKGKGYE GVVTRWGVTR LPRKTHRGLR KVACIGAWHP ARVSYTVARA GQNGYHHRTE LNKKIYRLGK VGTEAHTAMT
301: EYDRTEKDVT PMGGFPHYGI VKDDYLMIKG CCVGPKKRVV TLRQSLLTQT SRLALEEIKL KFIDTASIFG HGRFQTSLEK MRFYNRVTK

Arabidopsis Description

ARP160S ribosomal protein L3-1 [Source:UniProtKB/Swiss-Prot;Acc:P17094]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.