Factsheet for Zm00001d028622_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d004841_P002	Maize	cytosol	99.74	99.74
Zm00001d004839_P005	Maize	cytosol	99.74	99.74
Zm00001d003680_P003	Maize	cytosol	99.74	99.74
KXG27825	Sorghum	cytosol	97.17	97.17
Zm00001d003683_P005	Maize	cytosol, mitochondrion, plasma membrane, plastid	99.74	97.0
TraesCS4D01G109200.1	Wheat	cytosol, golgi, unclear	94.6	94.6
TraesCS4B01G111500.1	Wheat	cytosol	94.6	94.6
Os11t0168200-01	Rice	nucleus	94.6	94.6
TraesCS4A01G208000.1	Wheat	golgi, unclear	94.09	94.09
Zm00001d002463_P001	Maize	cytosol	60.67	93.28
HORVU4Hr1G019980.1	Barley	cytosol	94.6	89.54
GSMUA_Achr11P...	Banana	cytosol, plastid	88.95	88.95
GSMUA_Achr5P01070_001	Banana	cytosol	88.43	88.43
GSMUA_Achr7P03150_001	Banana	plasma membrane	88.17	88.17
Solyc01g104590.2.1	Tomato	endoplasmic reticulum, nucleus, plastid, unclear	86.89	86.89
GSMUA_Achr5P01330_001	Banana	cytosol	86.63	86.63
VIT_18s0072g00340.t01	Wine grape	cytosol	88.17	86.4
KRG91678	Soybean	cytosol	86.12	86.12
KRH35119	Soybean	nucleus	85.86	85.86
KRH36391	Soybean	endoplasmic reticulum	85.35	85.35
AT1G61580.1	Thale cress	cytosol	84.83	84.62
Bra031423.1-P	Field mustard	cytosol	84.32	84.32
Bra038589.1-P	Field mustard	cytosol	84.32	84.32
AT1G43170.1	Thale cress	cytosol	83.8	83.8
VIT_12s0035g01020.t01	Wine grape	cytosol	80.98	83.78
CDY26350	Canola	cytosol	44.73	83.65
CDY03838	Canola	cytosol, mitochondrion	44.73	83.65
CDY15022	Canola	cytosol	44.47	83.17
CDY68012	Canola	cytosol	76.61	82.78
Bra024985.1-P	Field mustard	cytosol	73.26	82.61
Bra024986.1-P	Field mustard	cytosol	82.78	82.35
Bra035298.1-P	Field mustard	cytosol, peroxisome, plastid	82.52	82.1
CDY33488	Canola	extracellular	75.06	81.34
CDY33490	Canola	cytosol	65.3	81.15
CDY72003	Canola	cytosol	65.3	81.15
CDY52305	Canola	cytosol	74.81	81.06
CDX77707	Canola	cytosol	74.81	81.06
CDY15023	Canola	cytosol	21.85	80.95
CDY02391	Canola	extracellular	74.55	80.78
GSMUA_AchrUn_...	Banana	cytosol	88.17	80.71
Bra027986.1-P	Field mustard	cytosol	73.26	80.28
CDY12965	Canola	cytosol	74.04	80.22
KRH27524	Soybean	endoplasmic reticulum, nucleus	85.86	77.14
CDY26351	Canola	cytosol	20.31	76.7
CDY03839	Canola	cytosol	20.31	76.7
Bra027830.1-P	Field mustard	cytosol	42.93	76.61
Solyc01g103510.2.1	Tomato	endoplasmic reticulum, nucleus	85.09	74.72
CDY45154	Canola	cytosol	11.05	65.15
VIT_07s0031g02050.t01	Wine grape	cytosol	19.28	53.57
GSMUA_Achr6P19610_001	Banana	plastid	9.25	46.15
Bra000894.1-P	Field mustard	cytosol	38.56	15.02

Protein Annotations

EntrezGene:100192516	MapMan:17.1.2.1.1	Gene3D:2.40.30.10	Gene3D:3.30.1430.10	Gene3D:4.10.960.10	UniProt:B4FBM9
EMBL:BT034517	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	GO:GO:0030529	ProteinID:ONL96594.1	ProteinID:ONL96596.1
PFAM:PF00297	ScanProsite:PS00474	PANTHER:PTHR11363	PANTHER:PTHR11363:SF6	InterPro:Ribosomal_L3	InterPro:Ribosomal_L3_CS
SUPFAM:SSF50447	InterPro:Transl_B-barrel_sf	UniParc:UPI00017B63F1	EnsemblPlantsGene:Zm00001d028622	EnsemblPlants:Zm00001d028622_P001	EnsemblPlants:Zm00001d028622_T001

Description

60S ribosomal protein L3-1

Coordinates

chr1:-:41158763..41162190

Molecular Weight (calculated)

44554.6 Da

IEP (calculated)

10.781

GRAVY (calculated)

-0.643

Length

389 amino acids

Sequence
(BLAST)

001: MSHRKFEHPR HGSLGFLPRK RSSRHRGKVK SFPRDDAKKP CHLTAFLGYK AGMTHIVREV EKPGSKLHKK ETCEAVTIIE TPPLVIVGLV AYVKTPRGLR
101: TLNSVWAQHL SEEVRRRFYK NWCKSKKKAF TKYALKYEND AGKKEIQLQL EKMKKYASVI RVIAHTQIRK MKGLKQKKAH LMEIQVNGGT IADKVDYGYK
201: FFEKEVPVDA VFQKDEMIDI IGVTKGKGYE GVVTRWGVTR LPRKTHRGLR KVACIGAWHP ARVSYTVARA GQNGYHHRTE MNKKVYKIGK AGQETHDAST
301: EFDRTEKDIT PMGGFPHYGI VKGDYLMIKG CCVGPKKRVV TLRQSLLKQT SRLALEEIKL KFIDTSSKFG HGRFQTTDEK QRFFGKLKA

Best Arabidopsis Sequence Match ( AT1G43170.5 )
(BLAST)

001: MSHRKFEHPR HGSLGFLPRK RANRHRGKVK AFPKDDQTKP CKFTAFMGYK AGMTHIVREV EKPGSKLHKK ETCEAVTIIE TPAMVVVGVV AYVKTPRGLR
101: SLNTVWAQHL SEEVRRRFYK NWAKSKKKAF TGYAKQYDSE DGKKGIQAQL EKMKKYATVI RVLAHTQIRK MKGLKQKKAH MMEIQINGGT IAQKVDFAYS
201: FFEKQIPIEA VFQKDEMIDI IGVTKGKGYE GVVTRWGVTR LPRKTHRGLR KVACIGAWHP ARVSYTVARA GQNGYHHRTE LNKKIYRLGK VGTEAHTAMT
301: EYDRTEKDVT PMGGFPHYGI VKDDYLMIKG CCVGPKKRVV TLRQSLLTQT SRLALEEIKL KFIDTASIFG HGRFQTSLEK MRFYNRVTK

Arabidopsis Description

ARP160S ribosomal protein L3-1 [Source:UniProtKB/Swiss-Prot;Acc:P17094]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.