CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY02391	Canola	extracellular	97.77	97.77
CDX77707	Canola	cytosol	96.66	96.66
CDY52305	Canola	cytosol	96.66	96.66
CDY72003	Canola	cytosol	84.12	96.49
CDY33490	Canola	cytosol	84.12	96.49
CDY33488	Canola	extracellular	96.1	96.1
CDY15023	Canola	cytosol	24.51	83.81
AT1G43170.1	Thale cress	cytosol	90.25	83.29
CDY68012	Canola	cytosol	81.89	81.67
CDY03839	Canola	cytosol	22.56	78.64
CDY26351	Canola	cytosol	22.56	78.64
CDY26350	Canola	cytosol	45.4	78.37
CDY15022	Canola	cytosol	45.4	78.37
CDY03838	Canola	cytosol, mitochondrion	45.4	78.37
Os11t0168200-01	Rice	nucleus	80.78	74.55
TraesCS4A01G208000.1	Wheat	golgi, unclear	80.78	74.55
TraesCS4B01G111500.1	Wheat	cytosol	80.78	74.55
TraesCS5A01G112400.1	Wheat	cytosol, golgi, nucleus	80.78	74.55
TraesCS5B01G118400.1	Wheat	cytosol, unclear	80.5	74.29
Os12t0167900-01	Rice	plastid	80.5	74.29
Zm00001d028622_P001	Maize	cytosol	80.22	74.04
Zm00001d004841_P002	Maize	cytosol	80.22	74.04
Zm00001d004839_P005	Maize	cytosol	80.22	74.04
Zm00001d003680_P003	Maize	cytosol	80.22	74.04
EES12864	Sorghum	cytosol, plastid	79.94	73.78
KXG27825	Sorghum	cytosol	79.39	73.26
Zm00001d003683_P005	Maize	cytosol, mitochondrion, plasma membrane, plastid	80.22	72.0
HORVU4Hr1G019980.1	Barley	cytosol	80.78	70.56
HORVU5Hr1G036630.1	Barley	plasma membrane	79.94	70.17
CDY45154	Canola	cytosol	11.98	65.15
Zm00001d002463_P001	Maize	cytosol	45.68	64.82

Protein Annotations

MapMan:17.1.2.1.1	Gene3D:2.40.30.10	Gene3D:3.30.1430.10	Gene3D:4.10.960.10	GO:A0A078FEZ6	UniProt:A0A078FEZ6
EnsemblPlants:CDY12965	ProteinID:CDY12965	ProteinID:CDY12965.1	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00070688001
PFAM:PF00297	PANTHER:PTHR11363	PANTHER:PTHR11363:SF6	InterPro:Ribosomal_L3	SUPFAM:SSF50447	InterPro:Transl_B-barrel_sf
UniParc:UPI0004EEEA20	SEG:seg	:	:	:	:

Description

BnaC02g29720DBnaC02g29720D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FEZ6]

Coordinates

chrLK032029:-:352384..354544

Molecular Weight (calculated)

41044.1 Da

IEP (calculated)

10.672

GRAVY (calculated)

-0.659

Length

359 amino acids

Sequence
(BLAST)

001: MSHRKFEHPR HGSLGFLPRK RANRPRGKVK AFPKDDQTKP CKFTAFMGYK AGMTHIVRDV EKPGSKLHKK ETCEAVTIIE TPAMVVVGVV AYVKTPRGLR
101: SLNTVWAQHL SEEVRRRFYK NWAKSKKKAF TGYAKQYETE EGKKSLRSQL EKMKKYGTVI RVLAHTQIRK MKGLKQKKSH LMEIQINGGS IADKVDFAYS
201: FFEKQIPIDA VFQKDEMIDV ACIGAWHPAR VSYTVARAGQ NGYHHRTELN KKIYRLGKVG QETHTAMTEY DRTEKDVTPM GGFAHYGVVK DDYLMIKGCC
301: MGPKKRVVTL RQSLLTQTSR LAMEQINLKF IDTSSKMGHG KFQTTQEKNK FYGRAATKA

Best Arabidopsis Sequence Match ( AT1G43170.5 )
(BLAST)

001: MSHRKFEHPR HGSLGFLPRK RANRHRGKVK AFPKDDQTKP CKFTAFMGYK AGMTHIVREV EKPGSKLHKK ETCEAVTIIE TPAMVVVGVV AYVKTPRGLR
101: SLNTVWAQHL SEEVRRRFYK NWAKSKKKAF TGYAKQYDSE DGKKGIQAQL EKMKKYATVI RVLAHTQIRK MKGLKQKKAH MMEIQINGGT IAQKVDFAYS
201: FFEKQIPIEA VFQKDEMIDI IGVTKGKGYE GVVTRWGVTR LPRKTHRGLR KVACIGAWHP ARVSYTVARA GQNGYHHRTE LNKKIYRLGK VGTEAHTAMT
301: EYDRTEKDVT PMGGFPHYGI VKDDYLMIKG CCVGPKKRVV TLRQSLLTQT SRLALEEIKL KFIDTASIFG HGRFQTSLEK MRFYNRVTK

Arabidopsis Description

ARP160S ribosomal protein L3-1 [Source:UniProtKB/Swiss-Prot;Acc:P17094]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.