CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 2
mitochondrion 2
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY03839	Canola	cytosol	86.67	88.35
CDY26351	Canola	cytosol	85.71	87.38
CDY68012	Canola	cytosol	93.33	27.22
CDX77707	Canola	cytosol	83.81	24.51
CDY02391	Canola	extracellular	83.81	24.51
CDY52305	Canola	cytosol	83.81	24.51
CDY12965	Canola	cytosol	83.81	24.51
AT1G61580.1	Thale cress	cytosol	90.48	24.36
CDY33488	Canola	extracellular	82.86	24.23
PGSC0003DMT400064116	Potato	cytosol	89.52	24.16
Os11t0168200-01	Rice	nucleus	82.86	22.36
Zm00001d004839_P005	Maize	cytosol	81.9	22.11
Zm00001d003680_P003	Maize	cytosol	81.9	22.11
TraesCS5B01G118400.1	Wheat	cytosol, unclear	81.9	22.11
Zm00001d004841_P002	Maize	cytosol	81.9	22.11
TraesCS5A01G112400.1	Wheat	cytosol, golgi, nucleus	81.9	22.11
Os12t0167900-01	Rice	plastid	80.95	21.85
KXG27825	Sorghum	cytosol	80.95	21.85
Zm00001d028622_P001	Maize	cytosol	80.95	21.85
EES12864	Sorghum	cytosol, plastid	80.95	21.85
TraesCS4B01G111500.1	Wheat	cytosol	80.0	21.59
Zm00001d003683_P005	Maize	cytosol, mitochondrion, plasma membrane, plastid	81.9	21.5
TraesCS4A01G208000.1	Wheat	golgi, unclear	79.05	21.34
Solyc01g103510.2.1	Tomato	endoplasmic reticulum, nucleus	89.52	21.22
HORVU5Hr1G036630.1	Barley	plasma membrane	81.9	21.03
HORVU4Hr1G019980.1	Barley	cytosol	80.0	20.44
VIT_12s0035g01020.t01	Wine grape	cytosol	67.62	18.88
CDY72003	Canola	cytosol	45.71	15.34
CDY33490	Canola	cytosol	45.71	15.34
CDY45154	Canola	cytosol	6.67	10.61
TraesCS4D01G109300.1	Wheat	cytosol, golgi, nucleus	11.43	5.11
Zm00001d002463_P001	Maize	cytosol	5.71	2.37
Bra000894.1-P	Field mustard	cytosol	17.14	1.8
CDY26350	Canola	cytosol	1.9	0.96
CDY15022	Canola	cytosol	1.9	0.96
CDY03838	Canola	cytosol, mitochondrion	1.9	0.96

Protein Annotations

MapMan:35.1	Gene3D:4.10.960.10	GO:A0A078FRX5	UniProt:A0A078FRX5	EnsemblPlants:CDY15023	ProteinID:CDY15023
ProteinID:CDY15023.1	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00085072001	PFAM:PF00297	PANTHER:PTHR11363
PANTHER:PTHR11363:SF6	InterPro:Ribosomal_L3	SUPFAM:SSF50447	InterPro:Transl_B-barrel_sf	UniParc:UPI0004EDB706	SEG:seg

Description

BnaCnng04260DBnaCnng04260D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FRX5]

Coordinates

chrLK032050:-:355336..356062

Molecular Weight (calculated)

11917.7 Da

IEP (calculated)

10.822

GRAVY (calculated)

-0.631

Length

105 amino acids

Sequence
(BLAST)

001: MSHRKFEHPR HGSLGFLPRK RANRQRGKVK AFPKDDPTKP CRLTSFLGYK AGMTHIVREV EKPGSKLHKK ETCEAVTVIE TPPMVVVGVV GYVKTPREEG
101: FHQIL

Best Arabidopsis Sequence Match ( AT1G43170.5 )
(BLAST)

001: MSHRKFEHPR HGSLGFLPRK RANRHRGKVK AFPKDDQTKP CKFTAFMGYK AGMTHIVREV EKPGSKLHKK ETCEAVTIIE TPAMVVVGVV AYVKTPRGLR
101: SLNTVWAQHL SEEVRRRFYK NWAKSKKKAF TGYAKQYDSE DGKKGIQAQL EKMKKYATVI RVLAHTQIRK MKGLKQKKAH MMEIQINGGT IAQKVDFAYS
201: FFEKQIPIEA VFQKDEMIDI IGVTKGKGYE GVVTRWGVTR LPRKTHRGLR KVACIGAWHP ARVSYTVARA GQNGYHHRTE LNKKIYRLGK VGTEAHTAMT
301: EYDRTEKDVT PMGGFPHYGI VKDDYLMIKG CCVGPKKRVV TLRQSLLTQT SRLALEEIKL KFIDTASIFG HGRFQTSLEK MRFYNRVTK

Arabidopsis Description

ARP160S ribosomal protein L3-1 [Source:UniProtKB/Swiss-Prot;Acc:P17094]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.