CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY03838	Canola	cytosol, mitochondrion	57.22	99.04
CDY26350	Canola	cytosol	56.39	97.6
CDY15022	Canola	cytosol	55.83	96.63
CDY15023	Canola	cytosol	27.22	93.33
Bra031423.1-P	Field mustard	cytosol	99.72	92.29
CDY26351	Canola	cytosol	25.56	89.32
CDY03839	Canola	cytosol	25.28	88.35
AT1G61580.1	Thale cress	cytosol	92.22	85.13
CDY33488	Canola	extracellular	82.5	82.73
CDY52305	Canola	cytosol	82.5	82.73
CDX77707	Canola	cytosol	82.5	82.73
CDY02391	Canola	extracellular	82.22	82.45
CDY33490	Canola	cytosol	71.39	82.11
CDY72003	Canola	cytosol	71.39	82.11
CDY12965	Canola	cytosol	81.67	81.89
CDY45154	Canola	cytosol	15.0	81.82
PGSC0003DMT400064116	Potato	cytosol	87.5	80.98
VIT_12s0035g01020.t01	Wine grape	cytosol	83.06	79.52
Zm00001d028622_P001	Maize	cytosol	82.78	76.61
Zm00001d004841_P002	Maize	cytosol	82.78	76.61
Zm00001d004839_P005	Maize	cytosol	82.78	76.61
Zm00001d003680_P003	Maize	cytosol	82.78	76.61
KXG27825	Sorghum	cytosol	82.5	76.35
EES12864	Sorghum	cytosol, plastid	82.22	76.09
TraesCS5A01G112400.1	Wheat	cytosol, golgi, nucleus	81.94	75.84
Os11t0168200-01	Rice	nucleus	81.94	75.84
TraesCS5B01G118400.1	Wheat	cytosol, unclear	81.67	75.58
TraesCS4B01G111500.1	Wheat	cytosol	81.39	75.32
Os12t0167900-01	Rice	plastid	81.11	75.06
TraesCS4A01G208000.1	Wheat	golgi, unclear	81.11	75.06
Zm00001d003683_P005	Maize	cytosol, mitochondrion, plasma membrane, plastid	82.78	74.5
HORVU5Hr1G036630.1	Barley	plasma membrane	81.67	71.88
HORVU4Hr1G019980.1	Barley	cytosol	81.39	71.29
Solyc01g103510.2.1	Tomato	endoplasmic reticulum, nucleus	87.5	71.11
Zm00001d002463_P001	Maize	cytosol	47.5	67.59
TraesCS4D01G109300.1	Wheat	cytosol, golgi, nucleus	12.5	19.15

Protein Annotations

MapMan:17.1.2.1.1	Gene3D:2.40.30.10	Gene3D:3.30.1430.10	Gene3D:4.10.960.10	GO:A0A078JRF9	UniProt:A0A078JRF9
EnsemblPlants:CDY68012	ProteinID:CDY68012	ProteinID:CDY68012.1	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00068437001
PFAM:PF00297	PANTHER:PTHR11363	PANTHER:PTHR11363:SF6	InterPro:Ribosomal_L3	SUPFAM:SSF50447	InterPro:Transl_B-barrel_sf
UniParc:UPI0004EECD4C	SEG:seg	:	:	:	:

Description

BnaAnng25900DBnaAnng25900D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JRF9]

Coordinates

chrLK036768:+:4162..6749

Molecular Weight (calculated)

41191.3 Da

IEP (calculated)

10.704

GRAVY (calculated)

-0.717

Length

360 amino acids

Sequence
(BLAST)

001: MSHRKFEHPR HGSLGFLPRK RANRQRGKVK AFPKDDHTKP CRLTSFLGYK AGMTHIVREV EKPGSKLHKK ETCEAVTVIE TPPMVVVGVV GYVKTPRGLR
101: SLSTVWAQHL SEEVRRRFYK NWAKSKKKAF TKYSKKHETE DGKKDIQSQL EKMKKYCTVI RVLAHTQIRK LKGLKQKKAH LNEIQVNGGD TAKKVDYAYS
201: LFEKQVPVDA IFQKDEMIDI IGVTKGKAWH PARVSYTVAR AGQNGYHHRT EMNKKIYRLG KVGQETHTAM TEFDRTEKEI TPMGGFPHYG IVKDDYLLIK
301: GCCVGPKKRV VTLRQTLLKQ TSRVALEEIK LKFIDTASNG GHGRFQTAEE KAKFYGRVKA

Best Arabidopsis Sequence Match ( AT1G61580.1 )
(BLAST)

001: MSHRKFEHPR HGSLGFLPRK RASRHRGKVK AFPKDDPTKP CRLTSFLGYK AGMTHIVRDV EKPGSKLHKK ETCEAVTIIE TPPMVVVGVV GYVKTPRGLR
101: SLCTVWAQHL SEELRRRFYK NWAKSKKKAF TRYSKKHETE EGKKDIQSQL EKMKKYCSVI RVLAHTQIRK MKGLKQKKAH LNEIQINGGD IAKKVDYACS
201: LFEKQVPVDA IFQKDEMIDI IGVTKGKGYE GVVTRWGVTR LPRKTHRGLR KVACIGAWHP ARVSYTVARA GQNGYHHRTE MNKKVYRVGK VGQETHSAMT
301: EYDRTEKDIT PMGGFPHYGI VKEDYLMIKG CCVGPKKRVV TLRQTLLKQT SRLAMEEIKL KFIDAASNGG HGRFQTSQEK AKFYGRTIKA

Arabidopsis Description

ARP260S ribosomal protein L3-2 [Source:UniProtKB/Swiss-Prot;Acc:P22738]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.