Factsheet for VIT_12s0035g01020.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
cytosol 4
mitochondrion 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	plastid
EpiLoc:	cytosol
iPSORT:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	cytosol
Predotar:	secretory
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY03838	Canola	cytosol, mitochondrion	48.94	88.46
CDY26350	Canola	cytosol	48.94	88.46
CDY15022	Canola	cytosol	48.67	87.98
PGSC0003DMT400064116	Potato	cytosol	90.16	87.15
VIT_18s0072g00340.t01	Wine grape	cytosol	89.36	84.63
Bra031423.1-P	Field mustard	cytosol	87.5	84.58
Bra038589.1-P	Field mustard	cytosol	87.23	84.32
AT1G61580.1	Thale cress	cytosol	86.44	83.33
CDY68012	Canola	cytosol	79.52	83.06
Zm00001d002463_P001	Maize	cytosol	55.59	82.61
Bra027830.1-P	Field mustard	cytosol	47.34	81.65
Os11t0168200-01	Rice	nucleus	84.31	81.49
Zm00001d004841_P002	Maize	cytosol	84.04	81.23
Zm00001d004839_P005	Maize	cytosol	84.04	81.23
Zm00001d003680_P003	Maize	cytosol	84.04	81.23
Zm00001d028622_P001	Maize	cytosol	83.78	80.98
Os12t0167900-01	Rice	plastid	83.51	80.72
EES12864	Sorghum	cytosol, plastid	83.51	80.72
TraesCS5B01G118400.1	Wheat	cytosol, unclear	83.24	80.46
TraesCS5A01G112400.1	Wheat	cytosol, golgi, nucleus	83.24	80.46
TraesCS4B01G111500.1	Wheat	cytosol	82.71	79.95
KXG27825	Sorghum	cytosol	82.45	79.69
TraesCS4A01G208000.1	Wheat	golgi, unclear	82.18	79.43
Zm00001d003683_P005	Maize	cytosol, mitochondrion, plasma membrane, plastid	84.04	79.0
HORVU5Hr1G036630.1	Barley	plasma membrane	82.98	76.28
Solyc01g103510.2.1	Tomato	endoplasmic reticulum, nucleus	89.63	76.07
HORVU4Hr1G019980.1	Barley	cytosol	82.71	75.67
CDY15023	Canola	cytosol	18.88	67.62
CDY03839	Canola	cytosol	17.55	64.08
CDY26351	Canola	cytosol	17.29	63.11
VIT_07s0031g02050.t01	Wine grape	cytosol	21.81	58.57
GSMUA_Achr6P19610_001	Banana	plastid	6.12	29.49
TraesCS4D01G109300.1	Wheat	cytosol, golgi, nucleus	10.64	17.02
Bra000894.1-P	Field mustard	cytosol	39.36	14.81

Protein Annotations

MapMan:17.1.2.1.1	Gene3D:2.40.30.10	Gene3D:3.30.1430.10	Gene3D:4.10.960.10	ProteinID:CCB55044	ProteinID:CCB55044.1
UniProt:F6HK41	EMBL:FN595990	GO:GO:0000027	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003735	GO:GO:0005198	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005829	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0016043	GO:GO:0019538	GO:GO:0022625	GO:GO:0030529
PFAM:PF00297	ScanProsite:PS00474	PANTHER:PTHR11363	PANTHER:PTHR11363:SF6	InterPro:Ribosomal_L3	InterPro:Ribosomal_L3_CS
SUPFAM:SSF50447	SignalP:SignalP-noTM	TIGR:TC52712	InterPro:Transl_B-barrel_sf	UniParc:UPI00021087F2	ArrayExpress:VIT_12s0035g01020
EnsemblPlantsGene:VIT_12s0035g01020	EnsemblPlants:VIT_12s0035g01020.t01	RefSeq:XP_002263053	RefSeq:XP_002263053.2	SEG:seg	:

Description

No Description!

Coordinates

chr12:+:20755403..20759962

Molecular Weight (calculated)

42955.8 Da

IEP (calculated)

10.663

GRAVY (calculated)

-0.525

Length

376 amino acids

Sequence
(BLAST)

001: MFRNIISLLF LSSRTVKAFP KDDPTNPCRL TAFLGYKAGM THIVREVEKP GSKLHKKETC EAVTIIETPP MVVVGVVGYL KTPRGLRSLN TVWAQHLSEE
101: VKRRFYKNWC KSKKKAFTKY SKKYESEDGK KDIQAQLEKM KKYCNVIRVL AHTQIRKMKG LKQKKAHLME IQVNGGDVAK KVDYAYGFFE KQIPIDAIFQ
201: KDEMIDIIGV TKGKGYEGVV TRWGVTRLPR KTHRGLRKVA CIGAWHPARV SFTVARAGQN GYHHRTEMNK KIYKVGKTGQ ESHSAMTEFD RTEKDITPMG
301: GFPHYGVVKD DYLLIKGCCV GPKKRVVTLR QSLLKQTSRV AMEEIKLKFI DTSSKFGHGR FQTTQEKAKF FGRLKA

Best Arabidopsis Sequence Match ( AT1G61580.1 )
(BLAST)

001: MSHRKFEHPR HGSLGFLPRK RASRHRGKVK AFPKDDPTKP CRLTSFLGYK AGMTHIVRDV EKPGSKLHKK ETCEAVTIIE TPPMVVVGVV GYVKTPRGLR
101: SLCTVWAQHL SEELRRRFYK NWAKSKKKAF TRYSKKHETE EGKKDIQSQL EKMKKYCSVI RVLAHTQIRK MKGLKQKKAH LNEIQINGGD IAKKVDYACS
201: LFEKQVPVDA IFQKDEMIDI IGVTKGKGYE GVVTRWGVTR LPRKTHRGLR KVACIGAWHP ARVSYTVARA GQNGYHHRTE MNKKVYRVGK VGQETHSAMT
301: EYDRTEKDIT PMGGFPHYGI VKEDYLMIKG CCVGPKKRVV TLRQTLLKQT SRLAMEEIKL KFIDAASNGG HGRFQTSQEK AKFYGRTIKA

Arabidopsis Description

ARP260S ribosomal protein L3-2 [Source:UniProtKB/Swiss-Prot;Acc:P22738]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.