Factsheet for VIT_18s0072g00340.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 5
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g104590.2.1	Tomato	endoplasmic reticulum, nucleus, plastid, unclear	91.94	93.83
PGSC0003DMT400076546	Potato	cytosol	91.69	93.57
KRG91678	Soybean	cytosol	90.18	92.03
KRH35119	Soybean	nucleus	89.92	91.77
VIT_12s0035g01020.t01	Wine grape	cytosol	84.63	89.36
Zm00001d004841_P002	Maize	cytosol	86.65	88.43
Zm00001d004839_P005	Maize	cytosol	86.65	88.43
Zm00001d003680_P003	Maize	cytosol	86.65	88.43
EES12864	Sorghum	cytosol, plastid	86.65	88.43
Zm00001d028622_P001	Maize	cytosol	86.4	88.17
Os12t0167900-01	Rice	plastid	86.15	87.92
TraesCS5A01G112400.1	Wheat	cytosol, golgi, nucleus	86.15	87.92
KXG27825	Sorghum	cytosol	85.89	87.66
TraesCS5B01G118400.1	Wheat	cytosol, unclear	85.89	87.66
TraesCS4B01G111500.1	Wheat	cytosol	85.64	87.4
Os11t0168200-01	Rice	nucleus	85.64	87.4
TraesCS4A01G208000.1	Wheat	golgi, unclear	85.14	86.89
Zm00001d003683_P005	Maize	cytosol, mitochondrion, plasma membrane, plastid	86.9	86.25
Zm00001d002463_P001	Maize	cytosol	53.9	84.58
HORVU4Hr1G019980.1	Barley	cytosol	86.15	83.21
HORVU5Hr1G036630.1	Barley	plasma membrane	85.64	83.13
VIT_07s0031g02050.t01	Wine grape	cytosol	21.41	60.71

Protein Annotations

EntrezGene:100260533	wikigene:100260533	EntrezGene:100267716	wikigene:100267716	MapMan:17.1.2.1.1	Gene3D:2.40.30.10
Gene3D:3.30.1430.10	Gene3D:4.10.960.10	EMBL:AM452874	EMBL:AM471157	ProteinID:CAN63848	ProteinID:CAN63848.1
ProteinID:CAN83050	ProteinID:CAN83050.1	ProteinID:CCB44885	ProteinID:CCB44885.1	UniProt:F6GY49	EMBL:FN594968
GO:GO:0000027	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003735	GO:GO:0005198
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829
GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0016043	GO:GO:0019538	GO:GO:0022625	GO:GO:0030529	EntrezGene:LOC100260533	wikigene:LOC100260533
EntrezGene:LOC100267716	wikigene:LOC100267716	PFAM:PF00297	ScanProsite:PS00474	PANTHER:PTHR11363	PANTHER:PTHR11363:SF6
InterPro:Ribosomal_L3	InterPro:Ribosomal_L3_CS	SUPFAM:SSF50447	TIGR:TC52348	TIGR:TC62803	InterPro:Transl_B-barrel_sf
UniParc:UPI000198553F	ArrayExpress:VIT_18s0072g00340	EnsemblPlantsGene:VIT_18s0072g00340	EnsemblPlants:VIT_18s0072g00340.t01	unigene:Vvi.7639	RefSeq:XP_002265125
RefSeq:XP_002265125.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr18:-:19526474..19530962

Molecular Weight (calculated)

45705.2 Da

IEP (calculated)

10.889

GRAVY (calculated)

-0.676

Length

397 amino acids

Sequence
(BLAST)

001: MENLRRRRMS HRKFEHPRHG SLGFLPRKRA ARHRGKVKAF PKDDPSKPCR LTAFLGYKAG MTHIVREVEK PGSKLHKKET CEAVTIVETP PMVIVGVVAY
101: VKTPRGLRSL NTVWAQHLSE EVKRRFYKNW CKSKKKAFTK YSKQYETEEG KKSIQAQLEK MKKYASVIRV LAHTQIRKMK GLKQKKAHLM EIQVNGGTIA
201: QKVDYAYGFF EKQVPVDAIF QKDEMIDIIG VTKGKGYEGV VTRWGVTRLP RKTHRGLRKV ACIGAWHPAR VSFTVARAGQ NGYHHRTEMN KKIYKLGKIE
301: QESHTALTEF DRTEKDITPM GGFPHYGVVK DDYVMIKGCC VGPKKRVVTL RQSLLKQTSR VALEEIKLKF IDTSSKFGHG RFQTTQEKQK FYGRMKA

Best Arabidopsis Sequence Match ( AT1G43170.5 )
(BLAST)

001: MSHRKFEHPR HGSLGFLPRK RANRHRGKVK AFPKDDQTKP CKFTAFMGYK AGMTHIVREV EKPGSKLHKK ETCEAVTIIE TPAMVVVGVV AYVKTPRGLR
101: SLNTVWAQHL SEEVRRRFYK NWAKSKKKAF TGYAKQYDSE DGKKGIQAQL EKMKKYATVI RVLAHTQIRK MKGLKQKKAH MMEIQINGGT IAQKVDFAYS
201: FFEKQIPIEA VFQKDEMIDI IGVTKGKGYE GVVTRWGVTR LPRKTHRGLR KVACIGAWHP ARVSYTVARA GQNGYHHRTE LNKKIYRLGK VGTEAHTAMT
301: EYDRTEKDVT PMGGFPHYGI VKDDYLMIKG CCVGPKKRVV TLRQSLLTQT SRLALEEIKL KFIDTASIFG HGRFQTSLEK MRFYNRVTK

Arabidopsis Description

ARP160S ribosomal protein L3-1 [Source:UniProtKB/Swiss-Prot;Acc:P17094]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.