Factsheet for PGSC0003DMT400076546

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 5
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g104590.2.1	Tomato	endoplasmic reticulum, nucleus, plastid, unclear	98.71	98.71
PGSC0003DMT400064116	Potato	cytosol	92.8	92.8
KRG91678	Soybean	cytosol	91.77	91.77
VIT_18s0072g00340.t01	Wine grape	cytosol	93.57	91.69
KRH35119	Soybean	nucleus	91.52	91.52
KRH36391	Soybean	endoplasmic reticulum	88.95	88.95
KRH27524	Soybean	endoplasmic reticulum, nucleus	89.46	80.37
CDY45154	Canola	cytosol	12.08	71.21
VIT_07s0031g02050.t01	Wine grape	cytosol	20.82	57.86
PGSC0003DMT400093371	Potato	cytosol	9.51	44.58

Protein Annotations

EntrezGene:102598069	MapMan:17.1.2.1.1	Gene3D:2.40.30.10	Gene3D:3.30.1430.10	Gene3D:4.10.960.10	ProteinID:ABB87120
ProteinID:ABB87120.1	EMBL:DQ241849	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	GO:GO:0030529	RefSeq:NP_001275276.1
PFAM:PF00297	EnsemblPlantsGene:PGSC0003DMG400029760	PGSC:PGSC0003DMG400029760	EnsemblPlants:PGSC0003DMT400076546	ScanProsite:PS00474	PANTHER:PTHR11363
PANTHER:PTHR11363:SF6	UniProt:Q2VCJ2	InterPro:Ribosomal_L3	InterPro:Ribosomal_L3_CS	SUPFAM:SSF50447	InterPro:Transl_B-barrel_sf
UniParc:UPI00005FEB9B	SEG:seg	:	:	:	:

Description

Ribosomal protein L3 [Source:PGSC_GENE;Acc:PGSC0003DMG400029760]

Coordinates

chr1:-:81408829..81411925

Molecular Weight (calculated)

44366.5 Da

IEP (calculated)

10.764

GRAVY (calculated)

-0.576

Length

389 amino acids

Sequence
(BLAST)

001: MSHRKFEHPR HGSLGFLPRK RAARHRGKVK AFPKDDPSKP CKLTAFLGYK AGMTHIVREV EKPGSKLHKK ETCEAVTIVE TPPMVIVGVV GYVKTPRGLR
101: CLNTVWAQHL SEDIKRRFYK NWCKSKKKAF LKYSKKYETD EGKKDIQAQL EKLKKYACVI RVLAHTQIRK MKGLKQKKAH LMEIQVNGGS IAQKVDFAYG
201: FFEKQVPVDA VFQKDEMIDI IGVTKGKGYE GVVTRWGVTR LPRKTHRGLR KVACIGAWHP ARVSFTVARA GQNGYHHRTE MNKKVYKLGK VGQESHTAVT
301: EFDRTEKEIT PIGGFAHYGV VKDDYLLIKG CCVGPKKRVV TLRQSLLNQT SRVALEEIKL KFIDTSSKFG HGRFQTTQEK QKFYGRLKA

Best Arabidopsis Sequence Match ( AT1G43170.5 )
(BLAST)

001: MSHRKFEHPR HGSLGFLPRK RANRHRGKVK AFPKDDQTKP CKFTAFMGYK AGMTHIVREV EKPGSKLHKK ETCEAVTIIE TPAMVVVGVV AYVKTPRGLR
101: SLNTVWAQHL SEEVRRRFYK NWAKSKKKAF TGYAKQYDSE DGKKGIQAQL EKMKKYATVI RVLAHTQIRK MKGLKQKKAH MMEIQINGGT IAQKVDFAYS
201: FFEKQIPIEA VFQKDEMIDI IGVTKGKGYE GVVTRWGVTR LPRKTHRGLR KVACIGAWHP ARVSYTVARA GQNGYHHRTE LNKKIYRLGK VGTEAHTAMT
301: EYDRTEKDVT PMGGFPHYGI VKDDYLMIKG CCVGPKKRVV TLRQSLLTQT SRLALEEIKL KFIDTASIFG HGRFQTSLEK MRFYNRVTK

Arabidopsis Description

ARP160S ribosomal protein L3-1 [Source:UniProtKB/Swiss-Prot;Acc:P17094]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.