CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 5
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH35119	Soybean	nucleus	99.23	99.23
Solyc01g104590.2.1	Tomato	endoplasmic reticulum, nucleus, plastid, unclear	92.03	92.03
PGSC0003DMT400076546	Potato	cytosol	91.77	91.77
KRH36391	Soybean	endoplasmic reticulum	91.52	91.52
VIT_18s0072g00340.t01	Wine grape	cytosol	92.03	90.18
Zm00001d004841_P002	Maize	cytosol	86.38	86.38
Zm00001d004839_P005	Maize	cytosol	86.38	86.38
Zm00001d003680_P003	Maize	cytosol	86.38	86.38
Zm00001d028622_P001	Maize	cytosol	86.12	86.12
TraesCS4A01G208000.1	Wheat	golgi, unclear	85.86	85.86
TraesCS4B01G111500.1	Wheat	cytosol	85.86	85.86
KXG27825	Sorghum	cytosol	85.86	85.86
EES12864	Sorghum	cytosol, plastid	85.6	85.6
TraesCS5A01G112400.1	Wheat	cytosol, golgi, nucleus	85.6	85.6
TraesCS5B01G118400.1	Wheat	cytosol, unclear	85.35	85.35
Os12t0167900-01	Rice	plastid	85.09	85.09
Os11t0168200-01	Rice	nucleus	85.09	85.09
Zm00001d003683_P005	Maize	cytosol, mitochondrion, plasma membrane, plastid	86.38	84.0
Zm00001d002463_P001	Maize	cytosol	54.24	83.4
KRH27524	Soybean	endoplasmic reticulum, nucleus	91.77	82.45
HORVU5Hr1G036630.1	Barley	plasma membrane	85.6	81.42
HORVU4Hr1G019980.1	Barley	cytosol	85.86	81.27

Protein Annotations

MapMan:17.1.2.1.1	Gene3D:2.40.30.10	Gene3D:3.30.1430.10	Gene3D:4.10.960.10	EMBL:ACUP02012697	EnsemblPlantsGene:GLYMA_20G168100
GO:GO:0000027	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003735	GO:GO:0005198
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829
GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0016043	GO:GO:0019538	GO:GO:0022625	GO:GO:0030529	UniProt:I1NH37	ProteinID:KRG91677.1
EnsemblPlants:KRG91678	ProteinID:KRG91678	ProteinID:KRG91678.1	PFAM:PF00297	ScanProsite:PS00474	PANTHER:PTHR11363
PANTHER:PTHR11363:SF6	InterPro:Ribosomal_L3	InterPro:Ribosomal_L3_CS	SUPFAM:SSF50447	InterPro:Transl_B-barrel_sf	UniParc:UPI000233D94C
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr20:+:40586028..40603852

Molecular Weight (calculated)

44399.4 Da

IEP (calculated)

10.842

GRAVY (calculated)

-0.618

Length

389 amino acids

Sequence
(BLAST)

001: MSHRKFEHPR HGSLGFLPRK RAARHRGKVK AFPKDDPSKA PKLTAFLGYK AGMTHIVREV EKPGSKLHKK ETCEPVTIIE TPPMVIVGVV GYVKTPRGLR
101: TLNTVWAQHL SEELKRRFYK NWCKSKKKAF TKYSKQYETE EGKKNIEAQL EKLKKYATVV RVLAHTQIRK MKGLKQKKAH IMEIQVNGGT IAQKVDFAYS
201: FFEKQVPIDA VFQKDEMIDI IGVTKGKGYE GVVTRWGVTR LPRKTHRGLR KVACIGAWHP ARVSFTVARA GQNGYHHRTE LNKKVYKLGK AGDESHSALT
301: EFDRTEKDIT PIGGFPHYGV VKDDYIMVKG CCVGPKKRVI TLRQSLLKQT SRVALEEIKL KFIDTSSKFG HGRFQTTQEK QKFFGRLKA

Best Arabidopsis Sequence Match ( AT1G43170.5 )
(BLAST)

001: MSHRKFEHPR HGSLGFLPRK RANRHRGKVK AFPKDDQTKP CKFTAFMGYK AGMTHIVREV EKPGSKLHKK ETCEAVTIIE TPAMVVVGVV AYVKTPRGLR
101: SLNTVWAQHL SEEVRRRFYK NWAKSKKKAF TGYAKQYDSE DGKKGIQAQL EKMKKYATVI RVLAHTQIRK MKGLKQKKAH MMEIQINGGT IAQKVDFAYS
201: FFEKQIPIEA VFQKDEMIDI IGVTKGKGYE GVVTRWGVTR LPRKTHRGLR KVACIGAWHP ARVSYTVARA GQNGYHHRTE LNKKIYRLGK VGTEAHTAMT
301: EYDRTEKDVT PMGGFPHYGI VKDDYLMIKG CCVGPKKRVV TLRQSLLTQT SRLALEEIKL KFIDTASIFG HGRFQTSLEK MRFYNRVTK

Arabidopsis Description

ARP160S ribosomal protein L3-1 [Source:UniProtKB/Swiss-Prot;Acc:P17094]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.