CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

plastid 2
cytosol 4
mitochondrion 2

Predictors

GFP

MS/MS

Papers

endoplasmic reticulum: 23041469
endoplasmic reticulum: 27224218
mitochondrion: 27780359

msms PMID: 27780359 doi

G Mustafa, S Komatsu

Graduate School of Life and Environmental Science, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

msms PMID: 23041469 doi

S Komatsu, R Kuji, Y Nanjo, S Hiraga, K Furukawa

National Institute of Crop Science, Tsukuba 305-8518, Japan. skomatsu@affrc.go.jp

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG91678	Soybean	cytosol	91.52	91.52
KRH35119	Soybean	nucleus	91.26	91.26
Solyc01g104590.2.1	Tomato	endoplasmic reticulum, nucleus, plastid, unclear	88.95	88.95
PGSC0003DMT400076546	Potato	cytosol	88.95	88.95
KRH27524	Soybean	endoplasmic reticulum, nucleus	98.2	88.22
EES12864	Sorghum	cytosol, plastid	85.86	85.86
Zm00001d004841_P002	Maize	cytosol	85.6	85.6
Zm00001d004839_P005	Maize	cytosol	85.6	85.6
Zm00001d003680_P003	Maize	cytosol	85.6	85.6
TraesCS5A01G112400.1	Wheat	cytosol, golgi, nucleus	85.35	85.35
Zm00001d028622_P001	Maize	cytosol	85.35	85.35
TraesCS5B01G118400.1	Wheat	cytosol, unclear	85.09	85.09
Os12t0167900-01	Rice	plastid	85.09	85.09
Os11t0168200-01	Rice	nucleus	85.09	85.09
KXG27825	Sorghum	cytosol	84.58	84.58
TraesCS4A01G208000.1	Wheat	golgi, unclear	84.06	84.06
TraesCS4B01G111500.1	Wheat	cytosol	84.06	84.06
Zm00001d003683_P005	Maize	cytosol, mitochondrion, plasma membrane, plastid	85.6	83.25
Zm00001d002463_P001	Maize	cytosol	52.7	81.03
HORVU5Hr1G036630.1	Barley	plasma membrane	84.83	80.68
HORVU4Hr1G019980.1	Barley	cytosol	84.06	79.56
CDY45154	Canola	cytosol	12.34	72.73
VIT_07s0031g02050.t01	Wine grape	cytosol	21.08	58.57

Protein Annotations

EntrezGene:100782902	MapMan:17.1.2.1.1	Gene3D:2.40.30.10	Gene3D:3.30.1430.10	Gene3D:4.10.960.10	EMBL:ACUP02005375
EnsemblPlantsGene:GLYMA_09G000700	GO:GO:0000027	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003735
GO:GO:0005198	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005829	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0016043	GO:GO:0019538	GO:GO:0022625	GO:GO:0030529	UniProt:I1KZP9
EnsemblPlants:KRH36391	ProteinID:KRH36391	ProteinID:KRH36391.1	PFAM:PF00297	ScanProsite:PS00474	PANTHER:PTHR11363
PANTHER:PTHR11363:SF6	InterPro:Ribosomal_L3	InterPro:Ribosomal_L3_CS	SUPFAM:SSF50447	InterPro:Transl_B-barrel_sf	UniParc:UPI0002338004
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr9:+:57906..61439

Molecular Weight (calculated)

44499.3 Da

IEP (calculated)

10.754

GRAVY (calculated)

-0.645

Length

389 amino acids

Sequence
(BLAST)

001: MSHRKFEHPR HGSLGFLPRK RASRHRGKVK AFPKDNPSQP CGLTAFVGYK AGMTHIVREV EKPGSKLHKK ETCEAVTIIE TPPLVVVGVV GYVKTPRGLR
101: TLNTVWAQHL SEEVKRRFYK NWCKSKKKAF TKYSKKYETE EGKKDIESQL EKLKKYATVI RVLAHTQIRK LKGLKQKKAH LMEIQVNGGT VDQKVDYAYS
201: FFEKQIPVDA VFHKDEMIDI VGVTKGKGYE GVVTRWGVTR LPRKTHRGLR KVACIGAWHP ARVSFTVARA GQNGYHHRTE LNKKIYKVAK ADHESHSAIT
301: EFDRTEKDIT PMGGFPHYGV VKDDYIMVKG CCVGPKKRVI TLRRSLLKQT SRVALEEIKL KFIDTSSKFG HGRFQTTQEK QKFYGRLKA

Best Arabidopsis Sequence Match ( AT1G43170.5 )
(BLAST)

001: MSHRKFEHPR HGSLGFLPRK RANRHRGKVK AFPKDDQTKP CKFTAFMGYK AGMTHIVREV EKPGSKLHKK ETCEAVTIIE TPAMVVVGVV AYVKTPRGLR
101: SLNTVWAQHL SEEVRRRFYK NWAKSKKKAF TGYAKQYDSE DGKKGIQAQL EKMKKYATVI RVLAHTQIRK MKGLKQKKAH MMEIQINGGT IAQKVDFAYS
201: FFEKQIPIEA VFQKDEMIDI IGVTKGKGYE GVVTRWGVTR LPRKTHRGLR KVACIGAWHP ARVSYTVARA GQNGYHHRTE LNKKIYRLGK VGTEAHTAMT
301: EYDRTEKDVT PMGGFPHYGI VKDDYLMIKG CCVGPKKRVV TLRQSLLTQT SRLALEEIKL KFIDTASIFG HGRFQTSLEK MRFYNRVTK

Arabidopsis Description

ARP160S ribosomal protein L3-1 [Source:UniProtKB/Swiss-Prot;Acc:P17094]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.