CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
cytosol 5
mitochondrion 2

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
nucleus: 27291164
mitochondrion: 27780359
endoplasmic reticulum: 28499913
nucleus: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 27780359 doi

G Mustafa, S Komatsu

Graduate School of Life and Environmental Science, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27291164 doi

X Yin, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG91678	Soybean	cytosol	99.23	99.23
Solyc01g104590.2.1	Tomato	endoplasmic reticulum, nucleus, plastid, unclear	91.77	91.77
PGSC0003DMT400076546	Potato	cytosol	91.52	91.52
KRH36391	Soybean	endoplasmic reticulum	91.26	91.26
VIT_18s0072g00340.t01	Wine grape	cytosol	91.77	89.92
Zm00001d004841_P002	Maize	cytosol	86.12	86.12
Zm00001d004839_P005	Maize	cytosol	86.12	86.12
Zm00001d003680_P003	Maize	cytosol	86.12	86.12
Zm00001d028622_P001	Maize	cytosol	85.86	85.86
TraesCS4A01G208000.1	Wheat	golgi, unclear	85.6	85.6
TraesCS4B01G111500.1	Wheat	cytosol	85.6	85.6
KXG27825	Sorghum	cytosol	85.6	85.6
EES12864	Sorghum	cytosol, plastid	85.35	85.35
TraesCS5A01G112400.1	Wheat	cytosol, golgi, nucleus	85.35	85.35
TraesCS5B01G118400.1	Wheat	cytosol, unclear	85.09	85.09
Os12t0167900-01	Rice	plastid	84.83	84.83
Os11t0168200-01	Rice	nucleus	84.83	84.83
Zm00001d003683_P005	Maize	cytosol, mitochondrion, plasma membrane, plastid	86.12	83.75
Zm00001d002463_P001	Maize	cytosol	53.98	83.0
KRH27524	Soybean	endoplasmic reticulum, nucleus	91.52	82.22
HORVU5Hr1G036630.1	Barley	plasma membrane	85.35	81.17
HORVU4Hr1G019980.1	Barley	cytosol	85.6	81.02

Protein Annotations

EntrezGene:100806256	MapMan:17.1.2.1.1	Gene3D:2.40.30.10	Gene3D:3.30.1430.10	Gene3D:4.10.960.10	EMBL:ACUP02006650
EnsemblPlantsGene:GLYMA_10G223400	GO:GO:0000027	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003735
GO:GO:0005198	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005829	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0016043	GO:GO:0019538	GO:GO:0022625	GO:GO:0030529	UniProt:I1LDE9
EnsemblPlants:KRH35119	ProteinID:KRH35119	ProteinID:KRH35119.1	PFAM:PF00297	ScanProsite:PS00474	PANTHER:PTHR11363
PANTHER:PTHR11363:SF6	InterPro:Ribosomal_L3	InterPro:Ribosomal_L3_CS	InterPro:Ribosomal_L3_arc	SUPFAM:SSF50447	TIGRFAMs:TIGR03626
InterPro:Transl_B-barrel_sf	UniParc:UPI000233C365	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr10:-:45440350..45443915

Molecular Weight (calculated)

44387.4 Da

IEP (calculated)

10.865

GRAVY (calculated)

-0.615

Length

389 amino acids

Sequence
(BLAST)

001: MSHRKFEHPR HGSLGFLPRK RAARHRGKVK AFPKDDPSKA PKLTAFLGYK AGMTHIVREV EKPGSKLHKK ETCEPVTIIE TPPMVIVGVV GYVKTPRGLR
101: TLNTVWAQHL SEELKRRFYK NWCKSKKKAF TKYSKQYETE EGKKNIEAQL EKLKKYATVV RVLAHTQIRK MKGLKQKKAH IMEIQVNGGS IAQKVDFAYS
201: FFEKQVPIDA VFQKDEMIDI IGVTKGKGYE GVVTRWGVTR LPRKTHRGLR KVACIGAWHP ARVSFTVARA GQNGYHHRTE LNKKVYKLGK AGDESHSALT
301: EFDRTEKDIT PMGGFPHYGV VKDDFIMVKG CCVGPKKRVI TLRQSLLKQT SRVALEEIKL KFIDTSSKFG HGRFQTTQEK QKFFGRLKA

Best Arabidopsis Sequence Match ( AT1G43170.5 )
(BLAST)

001: MSHRKFEHPR HGSLGFLPRK RANRHRGKVK AFPKDDQTKP CKFTAFMGYK AGMTHIVREV EKPGSKLHKK ETCEAVTIIE TPAMVVVGVV AYVKTPRGLR
101: SLNTVWAQHL SEEVRRRFYK NWAKSKKKAF TGYAKQYDSE DGKKGIQAQL EKMKKYATVI RVLAHTQIRK MKGLKQKKAH MMEIQINGGT IAQKVDFAYS
201: FFEKQIPIEA VFQKDEMIDI IGVTKGKGYE GVVTRWGVTR LPRKTHRGLR KVACIGAWHP ARVSYTVARA GQNGYHHRTE LNKKIYRLGK VGTEAHTAMT
301: EYDRTEKDVT PMGGFPHYGI VKDDYLMIKG CCVGPKKRVV TLRQSLLTQT SRLALEEIKL KFIDTASIFG HGRFQTSLEK MRFYNRVTK

Arabidopsis Description

ARP160S ribosomal protein L3-1 [Source:UniProtKB/Swiss-Prot;Acc:P17094]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.