Factsheet for Os12t0167900-01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

plasma membrane: 18260611
plastid: 21433289
nucleus: 23777608
plasma membrane: 27800704
plastid: 27992503

msms PMID: 23777608 doi

H Mujahid, F Tan, J Zhang, BR Nallamilli, K Pendarvis, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, MS 39762, USA.

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 27992503 doi

S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.

msms PMID: 18260611 doi

SH Natera, KL Ford, AM Cassin, JH Patterson, EJ Newbigin, A Bacic

Plant Cell Biology Research Centre, VIC, Australia. s.natera@unimelb.edu.au

msms PMID: 21433289 doi

S Reiland, J Grossmann, K Baerenfaller, P Gehrig, A Nunes-Nesi, AR Fernie, W Gruissem, S Baginsky

Department of Biology, Plant Biotechnology, ETH Zurich, Zurich, Switzerland.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os11t0168200-01	Rice	nucleus	98.2	98.2
TraesCS5B01G118400.1	Wheat	cytosol, unclear	95.12	95.12
TraesCS5D01G129200.1	Wheat	cytosol, golgi	94.86	94.86
TraesCS5A01G112400.1	Wheat	cytosol, golgi, nucleus	94.34	94.34
HORVU5Hr1G036630.1	Barley	plasma membrane	95.63	90.95
GSMUA_Achr7P03150_001	Banana	plasma membrane	87.92	87.92
GSMUA_Achr5P01070_001	Banana	cytosol	87.4	87.4
GSMUA_Achr11P...	Banana	cytosol, plastid	87.4	87.4
GSMUA_Achr5P01330_001	Banana	cytosol	87.15	87.15
Solyc01g104590.2.1	Tomato	endoplasmic reticulum, nucleus, plastid, unclear	86.38	86.38
VIT_18s0072g00340.t01	Wine grape	cytosol	87.92	86.15
KRH36391	Soybean	endoplasmic reticulum	85.09	85.09
KRG91678	Soybean	cytosol	85.09	85.09
KRH35119	Soybean	nucleus	84.83	84.83
AT1G43170.1	Thale cress	cytosol	84.58	84.58
AT1G61580.1	Thale cress	cytosol	83.8	83.59
VIT_12s0035g01020.t01	Wine grape	cytosol	80.72	83.51
Bra024986.1-P	Field mustard	cytosol	83.29	82.86
Bra031423.1-P	Field mustard	cytosol	82.78	82.78
Bra038589.1-P	Field mustard	cytosol	82.78	82.78
Bra024985.1-P	Field mustard	cytosol	73.26	82.61
Bra035298.1-P	Field mustard	cytosol, peroxisome, plastid	82.78	82.35
CDY33488	Canola	extracellular	75.06	81.34
CDY52305	Canola	cytosol	75.06	81.34
CDX77707	Canola	cytosol	75.06	81.34
CDY33490	Canola	cytosol	65.3	81.15
CDY72003	Canola	cytosol	65.3	81.15
CDY68012	Canola	cytosol	75.06	81.11
CDY02391	Canola	extracellular	74.81	81.06
CDY15023	Canola	cytosol	21.85	80.95
CDY26350	Canola	cytosol	43.19	80.77
CDY03838	Canola	cytosol, mitochondrion	43.19	80.77
Bra027986.1-P	Field mustard	cytosol	73.52	80.56
CDY12965	Canola	cytosol	74.29	80.5
CDY15022	Canola	cytosol	42.93	80.29
GSMUA_AchrUn_...	Banana	cytosol	87.66	80.24
KRH27524	Soybean	endoplasmic reticulum, nucleus	85.6	76.91
CDY03839	Canola	cytosol	20.31	76.7
CDY26351	Canola	cytosol	20.31	76.7
Bra027830.1-P	Field mustard	cytosol	42.16	75.23
Solyc01g103510.2.1	Tomato	endoplasmic reticulum, nucleus	84.06	73.81
CDY45154	Canola	cytosol	11.31	66.67
VIT_07s0031g02050.t01	Wine grape	cytosol	19.54	54.29
PGSC0003DMT400093371	Potato	cytosol	9.51	44.58
GSMUA_Achr6P19610_001	Banana	plastid	8.48	42.31
Bra000894.1-P	Field mustard	cytosol	37.79	14.71

Protein Annotations

MapMan:17.1.2.1.1	Gene3D:2.40.30.10	Gene3D:3.30.1430.10	Gene3D:4.10.960.10	EntrezGene:4349878	EntrezGene:4351604
ProteinID:AAX92996.1	ProteinID:AAX96477.1	ProteinID:ABA91585.1	ProteinID:ABA95909.1	EMBL:AK060925	EMBL:AK073392
EMBL:AK101469	EMBL:AP008218	ProteinID:BAF27689.1	ProteinID:BAF29269.1	ProteinID:BAT12841.1	ProteinID:BAT16042.1
EMBL:BK001243	EMBL:D12630	ProteinID:DAA01059.1	ProteinID:DAA01152.1	ProteinID:EAZ17565.1	ProteinID:EAZ19772.1
GO:GO:0000027	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003735	GO:GO:0005198
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829
GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0016020	GO:GO:0016021	GO:GO:0016043	GO:GO:0019538	GO:GO:0022625	EMBL:JX972165
EMBL:KF214531	EnsemblPlantsGene:Os12g0167900	EnsemblPlants:Os12t0167900-01	UniProt:P35684	PFAM:PF00297	ScanProsite:PS00474
PANTHER:PTHR11363	PANTHER:PTHR11363:SF6	UniProt:Q0IPU6	InterPro:Ribosomal_L3	InterPro:Ribosomal_L3_CS	SUPFAM:SSF50447
InterPro:Transl_B-barrel_sf	UniParc:UPI000016DEC7	RefSeq:XP_015617260.1	RefSeq:XP_015619855.1	:	:

Description

RIBOSOMAL PROTEIN L3ARibosomal protein L3A (Os12t0167900-01)

Coordinates

chr12:+:3429223..3431766

Molecular Weight (calculated)

44466.5 Da

IEP (calculated)

10.754

GRAVY (calculated)

-0.615

Length

389 amino acids

Sequence
(BLAST)

001: MSHRKFEHPR HGSLGFLPRK RSSRHRGKVK SFPKDDVSKP CHLTSFVGYK AGMTHIVREV EKPGSKLHKK ETCEAVTIIE TPPLVIVGLV AYVKTPRGLR
101: SLNSVWAQHL SEEVRRRFYK NWCKSKKKAF TKYALKYDSD AGKKEIQMQL EKMKKYASIV RVIAHTQIRK MKGLKQKKAH LMEIQINGGT IADKVDYGYK
201: FFEKEIPVDA VFQKDEMIDI IGVTKGKGYE GVVTRWGVTR LPRKTHRGLR KVACIGAWHP ARVSYTVARA GQNGYHHRTE MNKKVYKIGK SGQESHAACT
301: EFDRTEKDIT PMGGFPHYGV VKGDYLMIKG CCVGPKKRVV TLRQSLLKQT SRLALEEIKL KFIDTSSKFG HGRFQTTDEK QRFFGKLKA

Best Arabidopsis Sequence Match ( AT1G43170.5 )
(BLAST)

001: MSHRKFEHPR HGSLGFLPRK RANRHRGKVK AFPKDDQTKP CKFTAFMGYK AGMTHIVREV EKPGSKLHKK ETCEAVTIIE TPAMVVVGVV AYVKTPRGLR
101: SLNTVWAQHL SEEVRRRFYK NWAKSKKKAF TGYAKQYDSE DGKKGIQAQL EKMKKYATVI RVLAHTQIRK MKGLKQKKAH MMEIQINGGT IAQKVDFAYS
201: FFEKQIPIEA VFQKDEMIDI IGVTKGKGYE GVVTRWGVTR LPRKTHRGLR KVACIGAWHP ARVSYTVARA GQNGYHHRTE LNKKIYRLGK VGTEAHTAMT
301: EYDRTEKDVT PMGGFPHYGI VKDDYLMIKG CCVGPKKRVV TLRQSLLTQT SRLALEEIKL KFIDTASIFG HGRFQTSLEK MRFYNRVTK

Arabidopsis Description

ARP160S ribosomal protein L3-1 [Source:UniProtKB/Swiss-Prot;Acc:P17094]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.