Factsheet for PGSC0003DMT400093371

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 4
cytosol 4
mitochondrion 1
extracellular 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d002463_P001	Maize	cytosol	33.73	11.07
EES12864	Sorghum	cytosol, plastid	45.78	9.77
TraesCS5B01G118400.1	Wheat	cytosol, unclear	45.78	9.77
TraesCS5D01G129200.1	Wheat	cytosol, golgi	45.78	9.77
Os11t0168200-01	Rice	nucleus	44.58	9.51
Os12t0167900-01	Rice	plastid	44.58	9.51
PGSC0003DMT400064116	Potato	cytosol	44.58	9.51
PGSC0003DMT400076546	Potato	cytosol	44.58	9.51
TraesCS5A01G112400.1	Wheat	cytosol, golgi, nucleus	44.58	9.51
TraesCS4A01G208000.1	Wheat	golgi, unclear	43.37	9.25
TraesCS4B01G111500.1	Wheat	cytosol	43.37	9.25
TraesCS4D01G109200.1	Wheat	cytosol, golgi, unclear	43.37	9.25
HORVU5Hr1G036630.1	Barley	plasma membrane	44.58	9.05
HORVU4Hr1G019980.1	Barley	cytosol	43.37	8.76

Protein Annotations

MapMan:35.2	Gene3D:4.10.960.10	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	UniProt:M1DRU0	PFAM:PF00297
EnsemblPlantsGene:PGSC0003DMG400042942	PGSC:PGSC0003DMG400042942	EnsemblPlants:PGSC0003DMT400093371	PANTHER:PTHR11363	PANTHER:PTHR11363:SF6	InterPro:Ribosomal_L3
SUPFAM:SSF50447	InterPro:Transl_B-barrel_sf	UniParc:UPI000294941F	:	:	:

Description

Csf-3 protein [Source:PGSC_GENE;Acc:PGSC0003DMG400042942]

Coordinates

chr7:+:20272282..20273032

Molecular Weight (calculated)

9320.2 Da

IEP (calculated)

9.329

GRAVY (calculated)

-0.354

Length

83 amino acids

Sequence
(BLAST)

1: MYAQVSLPLV ISRDKGSLAD QQWLSSAGHV QSVGSDRDRA PLKVACIGAW QPARVSLTMV CVGQNGYHHR TEQHLLHWEK HKF

Best Arabidopsis Sequence Match ( AT1G43170.4 )
(BLAST)

001: MVVVGVVAYV KTPRGLRSLN TVWAQHLSEE VRRRFYKNWA KSKKKAFTGY AKQYDSEDGK KGIQAQLEKM KKYATVIRVL AHTQIRKMKG LKQKKAHMME
101: IQINGGTIAQ KVDFAYSFFE KQIPIEAVFQ KDEMIDIIGV TKGKGYEGVV TRWGVTRLPR KTHRGLRKVA CIGAWHPARV SYTVARAGQN GYHHRTELNK
201: KIYRLGKVGT EAHTAMTEYD RTEKDVTPMG GFPHYGIVKD DYLMIKGCCV GPKKRVVTLR QSLLTQTSRL ALEEIKLKFI DTASIFGHGR FQTSLEKMRF
301: YNRVTK

Arabidopsis Description

ARP160S ribosomal protein L3-1 [Source:UniProtKB/Swiss-Prot;Acc:P17094]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.